suba logo
AT5G56230.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
plastid 0.643
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : prenylated RAB acceptor 1.G2
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
prenylated RAB acceptor 1.G2 (PRA1.G2); CONTAINS InterPro DOMAIN/s: Prenylated rab acceptor PRA1 (InterPro:IPR004895); BEST Arabidopsis thaliana protein match is: prenylated RAB acceptor 1.G1 (TAIR:AT1G55640.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5130eggNOG:KOG3142EMBL:AB023029EMBL:CP002688EnsemblPlants:AT5G56230EnsemblPlants:AT5G56230.1entrez:835722
GeneID:835722Genevisible:Q9FH16GO:GO:0005783GO:GO:0005789GO:GO:0016021GO:GO:0016192Gramene:AT5G56230.1
hmmpanther:PTHR19317hmmpanther:PTHR19317:SF11HOGENOM:HOG000115680InParanoid:Q9FH16InterPro:IPR004895KEGG:ath:AT5G56230OMA:IFLFFRE
PaxDb:Q9FH16Pfam:PF03208Pfam:Q9FH16PhylomeDB:Q9FH16PRO:PR:Q9FH16ProteinModelPortal:Q9FH16Proteomes:UP000006548
RefSeq:NP_200434.1STRING:3702.AT5G56230.1TAIR:AT5G56230tair10-symbols:PRA1.G2TMHMM:TMhelixUniGene:At.29399UniProt:Q9FH16
Coordinates (TAIR10) chr5:-:22758768..22759328
Molecular Weight (calculated) 20533.00 Da
IEP (calculated) 5.04
GRAVY (calculated) 0.74
Length 186 amino acids
Sequence (TAIR10)
(BLAST)
001: MTPSPPPITY ISIPLPTNDV VSRSIHNLTT AISSHRPWSE LIFSGDFSLP ESFSSLLLRS KTNFNYFFVN YTIIVSTCAA FALITASPVA LIVVGAIIAL
101: WLIFHFFRED PLILWSFQVG DRTVLLFLVL ASVWAIWFTN SAVNLAVGVS VGLLLCIIHA VFRNSDELFL EEDDAINGGL IGSNLR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)