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AT5G56180.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
mitochondrion 0.952
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : actin-related protein 8
Curator
Summary (TAIR10)
encodes a protein whose sequence is similar to actin-related proteins (ARPs) in other organisms. Member of nuclear ARP family of genes.
Computational
Description (TAIR10)
actin-related protein 8 (ARP8); CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), Actin/actin-like (InterPro:IPR004000); BEST Arabidopsis thaliana protein match is: actin-11 (TAIR:AT3G12110.1); Has 10755 Blast hits to 10746 proteins in 2376 species: Archae - 0; Bacteria - 6; Metazoa - 4699; Fungi - 2663; Plants - 1312; Viruses - 0; Other Eukaryotes - 2075 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5277eggNOG:KOG0676EMBL:AB011476EMBL:AF507916EMBL:AF507917EMBL:AY088717EMBL:BK000426
EMBL:BT004068EMBL:CP002688EnsemblPlants:AT5G56180EnsemblPlants:AT5G56180.1entrez:835717GeneID:835717Genevisible:Q9FKT0
GO:GO:0005200GO:GO:0005524GO:GO:0005634GO:GO:0005730GO:GO:0005737GO:GO:0030029hmmpanther:PTHR11937
hmmpanther:PTHR11937:SF161HOGENOM:HOG000006403InParanoid:Q9FKT0InterPro:IPR001810InterPro:IPR004000InterPro:IPR030071KEGG:ath:AT5G56180
KO:K16616OMA:FQGRVMHPANTHER:PTHR11937PANTHER:PTHR11937:SF161PaxDb:Q9FKT0Pfam:PF00022Pfam:PF12937
Pfam:Q9FKT0Pfscan:PS50181PhylomeDB:Q9FKT0PRIDE:Q9FKT0PRO:PR:Q9FKT0PROSITE:PS50181ProteinModelPortal:Q9FKT0
Proteomes:UP000006548RefSeq:NP_568836.2RefSeq:NP_974940.1SMART:SM00256SMART:SM00268SMR:Q9FKT0STRING:3702.AT5G56180.1
SUPFAM:SSF53067SUPFAM:SSF81383TAIR:AT5G56180tair10-symbols:ARP8tair10-symbols:ATARP8UniGene:At.29402UniProt:Q9FKT0
Coordinates (TAIR10) chr5:-:22737539..22740986
Molecular Weight (calculated) 52513.00 Da
IEP (calculated) 9.35
GRAVY (calculated) 0.04
Length 471 amino acids
Sequence (TAIR10)
(BLAST)
001: MILKKVWGSV WNRSNSGKDL VNHQRAIDVP PLLLSSSSSL GAFDQLPMDI LVQILMMMEP KDAVKLGLTC KAWKCVASGN RLWIFYLQCS QEPWDSIFFA
101: ETSLRSGYPL RMISSQSGEL SFMHIYSQRA QVPGSIIIDG GSGYCKFGWS KYASPSGRSA TFLEFGNIES PIYARLQQFF ATIFTRMQVK PSMQPIVVSL
201: PLCHFDDTES AKASRRQLKT AIFNVLFDMN VPAVCAVNQA VLALYAARRT SGIVVNIGFQ VITILPILHG KVMRQVGVEV IGFGALKLTG FLKEKMQENN
301: ISFQSLYTVR TLKEKLCYVA LDYKAELSKD TQASVEVSGE GWFTLSKERF QTGEILFQPR LAGMRAMSLH QAVSLCMDHC DAAGLTGDDS WFKTVVLTGG
401: SACLPGLSER LERELQDHLP SSISNGIRVI PPPYGVDTSW HGAKLISNLS IFPGPWCITR KQFRRKSRLM W
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)