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AT5G56110.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : myb domain protein 103
Curator
Summary (TAIR10)
Encodes a member of the R2R3 MYB transcription factor gene family that is required for anther development by regulation tapetum development, callose dissolution and exine formation. It acts upstream of MS2.
Computational
Description (TAIR10)
myb domain protein 103 (MYB103); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 74 (TAIR:AT4G05100.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5147eggNOG:KOG0048EMBL:AB011476EMBL:AB493793EMBL:AF048839EMBL:AY519639EMBL:CP002688
EnsemblPlants:AT5G56110EnsemblPlants:AT5G56110.1entrez:835710Gene3D:1.10.10.60GeneID:835710GO:GO:0003700GO:GO:0005634
GO:GO:0006355GO:GO:0010090GO:GO:0043565GO:GO:0048658Gramene:AT5G56110.1hmmpanther:PTHR10641hmmpanther:PTHR10641:SF653
HOGENOM:HOG000237600InterPro:IPR001005InterPro:IPR009057InterPro:IPR017930KEGG:ath:AT5G56110KO:K09422ncoils:Coil
OMA:NQINFSNPfam:PF00249Pfscan:PS51294PROSITE:PS51294Proteomes:UP000006548RefSeq:NP_200422.1SMART:SM00717
SMR:Q9XHV0STRING:3702.AT5G56110.1SUPFAM:SSF46689TAIR:AT5G56110tair10-symbols:AtMYB103tair10-symbols:ATMYB80tair10-symbols:MS188
tair10-symbols:MYB103UniGene:At.50533UniProt:Q9XHV0
Coordinates (TAIR10) chr5:+:22719191..22720664
Molecular Weight (calculated) 35985.50 Da
IEP (calculated) 7.32
GRAVY (calculated) -0.73
Length 320 amino acids
Sequence (TAIR10)
(BLAST)
001: MGRIPCCEKE NVKRGQWTPE EDNKLASYIA QHGTRNWRLI PKNAGLQRCG KSCRLRWTNY LRPDLKHGQF SEAEEHIIVK FHSVLGNRWS LIAAQLPGRT
101: DNDVKNYWNT KLKKKLSGMG IDPVTHKPFS HLMAEITTTL NPPQVSHLAE AALGCFKDEM LHLLTKKRVD LNQINFSNHN PNPNNFHEIA DNEAGKIKMD
201: GLDHGNGIMK LWDMGNGFSY GSSSSSFGNE ERNDGSASPA VAAWRGHGGI RTAVAETAAA EEEERRKLKG EVVDQEEIGS EGGRGDGMTM MRNHHHHQHV
301: FNVDNVLWDL QADDLINHMV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)