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AT5G56040.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 0.952
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Leucine-rich receptor-like protein kinase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Leucine-rich receptor-like protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat receptor-like protein kinase family protein (TAIR:AT4G26540.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-1497-MONOMEReggNOG:COG4886eggNOG:ENOG410IIZEEMBL:AY072083EMBL:CP002688EMBL:FJ708803EnsemblPlants:AT5G56040
EnsemblPlants:AT5G56040.1entrez:835702ExpressionAtlas:Q8VYG7Gene3D:3.80.10.10GeneID:835702GO:GO:0004674GO:GO:0005524
GO:GO:0016021Gramene:AT5G56040.1hmmpanther:PTHR27000hmmpanther:PTHR27000:SF186HOGENOM:HOG000116551IntAct:Q8VYG7InterPro:IPR000719
InterPro:IPR001611InterPro:IPR003591InterPro:IPR008271InterPro:IPR011009InterPro:IPR013210InterPro:IPR017441InterPro:IPR032675
Pfam:PF00069Pfam:PF08263Pfam:PF13855Pfscan:PS50011PhylomeDB:Q8VYG7PROSITE:PS00107PROSITE:PS00108
PROSITE:PS50011Proteomes:UP000006548RefSeq:NP_200415.2scanprosite:PS00107scanprosite:PS00108SMART:SM00220SMART:SM00369
SMR:Q8VYG7STRING:3702.AT5G56040.2SUPFAM:SSF52047SUPFAM:SSF56112TAIR:AT5G56040TMHMM:TMhelixUniGene:At.27847
UniProt:Q8VYG7
Coordinates (TAIR10) chr5:+:22695050..22697911
Molecular Weight (calculated) 103997.00 Da
IEP (calculated) 5.73
GRAVY (calculated) 0.02
Length 953 amino acids
Sequence (TAIR10)
(BLAST)
001: MPRNPRFCFF LFLLFHSSLF FSIPCFSIDE QGLALLSWKS QLNISGDALS SWKASESNPC QWVGIKCNER GQVSEIQLQV MDFQGPLPAT NLRQIKSLTL
101: LSLTSVNLTG SIPKELGDLS ELEVLDLADN SLSGEIPVDI FKLKKLKILS LNTNNLEGVI PSELGNLVNL IELTLFDNKL AGEIPRTIGE LKNLEIFRAG
201: GNKNLRGELP WEIGNCESLV TLGLAETSLS GRLPASIGNL KKVQTIALYT SLLSGPIPDE IGNCTELQNL YLYQNSISGS IPVSMGRLKK LQSLLLWQNN
301: LVGKIPTELG TCPELFLVDL SENLLTGNIP RSFGNLPNLQ ELQLSVNQLS GTIPEELANC TKLTHLEIDN NQISGEIPPL IGKLTSLTMF FAWQNQLTGI
401: IPESLSQCQE LQAIDLSYNN LSGSIPNGIF EIRNLTKLLL LSNYLSGFIP PDIGNCTNLY RLRLNGNRLA GNIPAEIGNL KNLNFIDISE NRLIGNIPPE
501: ISGCTSLEFV DLHSNGLTGG LPGTLPKSLQ FIDLSDNSLT GSLPTGIGSL TELTKLNLAK NRFSGEIPRE ISSCRSLQLL NLGDNGFTGE IPNELGRIPS
601: LAISLNLSCN HFTGEIPSRF SSLTNLGTLD VSHNKLAGNL NVLADLQNLV SLNISFNEFS GELPNTLFFR KLPLSVLESN KGLFISTRPE NGIQTRHRSA
701: VKVTMSILVA ASVVLVLMAV YTLVKAQRIT GKQEELDSWE VTLYQKLDFS IDDIVKNLTS ANVIGTGSSG VVYRVTIPSG ETLAVKKMWS KEENRAFNSE
801: INTLGSIRHR NIIRLLGWCS NRNLKLLFYD YLPNGSLSSL LHGAGKGSGG ADWEARYDVV LGVAHALAYL HHDCLPPILH GDVKAMNVLL GSRFESYLAD
901: FGLAKIVSGE GVTDGDSSKL SNRPPLAGSY GYMAPGKIQN FDFNVINLSI SKY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)