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AT5G56020.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.915
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Got1/Sft2-like vescicle transport protein family
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Got1/Sft2-like vescicle transport protein family; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: vesicle-mediated transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Vesicle transport protein, Got1/SFT2-like (InterPro:IPR007305), Vesicle transport protein, SFT2-like (InterPro:IPR011691); BEST Arabidopsis thaliana protein match is: Got1/Sft2-like vescicle transport protein family (TAIR:AT4G26550.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5102eggNOG:KOG2887EMBL:AB011476EMBL:CP002688EnsemblPlants:AT5G56020EnsemblPlants:AT5G56020.1entrez:835700
GeneID:835700GO:GO:0016021GO:GO:0016192Gramene:AT5G56020.1hmmpanther:PTHR23137hmmpanther:PTHR23137:SF10HOGENOM:HOG000006197
InterPro:IPR007305InterPro:IPR011691KEGG:ath:AT5G56020OMA:WARGATDPANTHER:PTHR23137Pfam:PF04178PhylomeDB:Q9FKU4
Proteomes:UP000006548RefSeq:NP_200413.1STRING:3702.AT5G56020.1TAIR:AT5G56020TMHMM:TMhelixUniGene:At.43719UniProt:Q9FKU4
Coordinates (TAIR10) chr5:+:22684586..22686206
Molecular Weight (calculated) 24868.30 Da
IEP (calculated) 8.04
GRAVY (calculated) 0.44
Length 230 amino acids
Sequence (TAIR10)
(BLAST)
001: MEKMAKGWFP MSGTSSSGDQ QQQPLQTGGT SLLADWNSYA ASRDFEEDTG TLGFDIESAV RSANDTVSGT FNVVSKGVRD NLQSATSSMP SGKALMYFGL
101: LLASGVFFIF IAFTMFLPVM VLMPQKFAIC FTLGCGFIIG SFFALRGPQN QLAHMSSAER LPLTLGFIAT MVGTIYVSMV LHSYILSVIF SALQVIALAY
201: YCISYFPGGS SGMKFLSSTL TSSVFRMFGR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)