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AT5G55990.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
vacuole 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:23482856 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:23109687 (2013): plasma membrane
  • PMID:23109687 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:14760709 (2004): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : calcineurin B-like protein 2
Curator
Summary (TAIR10)
Encodes a member of the Arabidopsis CBL (Calcineurin B-like Calcium Sensor) protein family.
Computational
Description (TAIR10)
calcineurin B-like protein 2 (CBL2); FUNCTIONS IN: calcium ion binding; INVOLVED IN: calcium-mediated signaling; LOCATED IN: cytosolic ribosome, plant-type vacuole membrane, vacuole, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Recoverin (InterPro:IPR001125), EF-HAND 2 (InterPro:IPR018249), Calcineurin B protein (InterPro:IPR015757), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048); BEST Arabidopsis thaliana protein match is: calcineurin B-like 3 (TAIR:AT4G26570.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:20941DIP:DIP-32474NeggNOG:COG5126eggNOG:KOG0034EMBL:AB011476EMBL:AF076252EMBL:AY052304
EMBL:AY087638EMBL:AY139808EMBL:CP002688EnsemblPlants:AT5G55990EnsemblPlants:AT5G55990.1entrez:835697EvolutionaryTrace:Q8LAS7
Gene3D:1.10.238.10GeneID:835697Genevisible:Q8LAS7GO:GO:0005509GO:GO:0005773GO:GO:0009705GO:GO:0016020
GO:GO:0019722GO:GO:0022626GO:GO:0055075Gramene:AT5G55990.1hmmpanther:PTHR23056hmmpanther:PTHR23056:SF44HOGENOM:HOG000233019
InParanoid:Q8LAS7IntAct:Q8LAS7InterPro:IPR002048InterPro:IPR011992iPTMnet:Q8LAS7KEGG:ath:AT5G55990OMA:LYKQSRG
PaxDb:Q8LAS7PDB:1UHNPDB:2ZFDPDBsum:1UHNPDBsum:2ZFDPfam:PF13202Pfam:PF13833
Pfam:Q8LAS7Pfscan:PS50222PhylomeDB:Q8LAS7PIR:T51357PRIDE:Q8LAS7PRO:PR:Q8LAS7PROSITE:PS50222
ProteinModelPortal:Q8LAS7Proteomes:UP000006548RefSeq:NP_200410.1SMART:SM00054SMR:Q8LAS7STRING:3702.AT5G55990.1SUPFAM:SSF47473
SwissPalm:Q8LAS7TAIR:AT5G55990tair10-symbols:ATCBL2tair10-symbols:CBL2UniGene:At.25275UniGene:At.8049UniProt:Q8LAS7
Coordinates (TAIR10) chr5:+:22672189..22673579
Molecular Weight (calculated) 25810.80 Da
IEP (calculated) 4.66
GRAVY (calculated) -0.22
Length 226 amino acids
Sequence (TAIR10)
(BLAST)
001: MSQCVDGIKH LCTSVLGCFD LDLYKQSGGL GDPELLARDT VFSVSEIEAL YELFKKISSA VIDDGLINKE EFQLALFKTN KKESLFADRV FDLFDTKHNG
101: ILGFEEFARA LSVFHPNAPI DDKIHFSFQL YDLKQQGFIE RQEVKQMVVA TLAESGMNLK DTVIEDIIDK TFEEADTKHD GKIDKEEWRS LVLRHPSLLK
201: NMTLQYLKDI TTTFPSFVFH SQVEDT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)