AT5G55970.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.978 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : RING/U-box superfamily protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; LOCATED IN: chloroplast; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, 4 leaf senescence stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT4G26580.2); Has 9514 Blast hits to 9491 proteins in 268 species: Archae - 0; Bacteria - 0; Metazoa - 2536; Fungi - 688; Plants - 4940; Viruses - 19; Other Eukaryotes - 1331 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:22668019..22669312 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 39038.90 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.21 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.08 | ||||||||||||||||||||||||||||||||||||
| Length | 343 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MNTRYSNQPE LSSSNITITI SSSALLSSSP RGDNSHVAAA NGQERSPSSF YIRLAMKVSR ARWFIFLRRV FHYQNGSRSD LGSNPFNSST WMMSELIALL 101: VQLTVITFTL AISKEERPIW PVRLWITGYD VGCLLNLMLL YGRYRQLDIN QGNGFVLGDV EQQQRGREET RSSHLMNKCR TSLELFFAIW FVIGNVWVFD 201: SRFGSFHHAP KLHVLCVSLL AWNAICYSFP FLLFLFLCCL VPLISSLLGY NMNMGSSDRA ASDDQISSLP SWKFKRIDDS ASDSDSDSAT VTDDPECCIC 301: LAKYKDKEEV RKLPCSHKFH SKCVDQWLRI ISCCPLCKQD LPR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)