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AT5G55950.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
vacuole 0.580
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Nucleotide/sugar transporter family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Nucleotide/sugar transporter family protein; INVOLVED IN: N-terminal protein myristoylation, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: inflorescence meristem, petal, leaf whorl, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: UAA transporter (InterPro:IPR013657), Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: Nucleotide/sugar transporter family protein (TAIR:AT5G57100.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XP1SeggNOG:KOG1441EMBL:AB026659EMBL:AK230288EMBL:CP002688EMBL:DQ447080EnsemblPlants:AT5G55950
EnsemblPlants:AT5G55950.1entrez:835693GeneID:835693GO:GO:0008643GO:GO:0016021Gramene:AT5G55950.1hmmpanther:PTHR11132
hmmpanther:PTHR11132:SF38InterPro:IPR004853KEGG:ath:AT5G55950OMA:PVVAMSFPfam:PF03151PhylomeDB:Q9FG70Proteomes:UP000006548
RefSeq:NP_200406.1STRING:3702.AT5G55950.1TAIR:AT5G55950TMHMM:TMhelixUniGene:At.29414UniProt:Q9FG70
Coordinates (TAIR10) chr5:-:22658411..22660253
Molecular Weight (calculated) 42646.70 Da
IEP (calculated) 10.06
GRAVY (calculated) 0.58
Length 398 amino acids
Sequence (TAIR10)
(BLAST)
001: MGLVDSLLGK DARKFLKRKD SDAAEAGRAL EELRSSLYNE LKTSEGAKRQ QQRFCGPVVA MSFNFVVAVG IILANKLVMG RVGFNFPIFL TLIHYTVAWI
101: LLAFFKSLSL LPMSPPSKTT PFSSLFSLGA VMAFASGLAN TSLKHNSVGF YQMAKIAVTP TIVLAEFVLF KKTISSTKVM ALAVVSLGVA IATVTDLEFN
201: LFGALVAVAW IIPSAINKIL WSNLQQQANW TALALMWKTT PFTVFFLLAL MPWLDPPGVL LFKWDLTNSS AILISALLGF LLQWSGALAL GATSATSHVV
301: LGQFKTCVIL LGGYVIFGSD PGFISICGAI AALGGMSVYT WLNLPGKSID HMSNKQLPKQ NVTVSKPKAE ADDGGGETGV TVVSVDPLLS KTITANIV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)