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AT5G55940.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
endoplasmic reticulum 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:22923678 (2012): endoplasmic reticulum
  • PMID:19334764 (2009): plasma membrane
  • PMID:16618929 (2006): endoplasmic reticulum
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Uncharacterised protein family (UPF0172)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
embryo defective 2731 (emb2731); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0172 (InterPro:IPR005366); BEST Arabidopsis thaliana protein match is: Uncharacterised protein family (UPF0172) (TAIR:AT5G51620.3); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
DNASU:835692eggNOG:ENOG410Y8KSeggNOG:KOG3289EMBL:AB026659EMBL:AY072016EMBL:AY122887EMBL:CP002688
EnsemblPlants:AT5G55940EnsemblPlants:AT5G55940.1entrez:835692ExpressionAtlas:Q9FG71GeneID:835692Genevisible:Q9FG71GO:GO:0005783
Gramene:AT5G55940.1hmmpanther:PTHR12941HOGENOM:HOG000006797InParanoid:Q9FG71InterPro:IPR005366KEGG:ath:AT5G55940OMA:QISDAVP
PANTHER:PTHR12941PaxDb:Q9FG71Pfam:PF03665Pfam:Q9FG71PhylomeDB:Q9FG71PRIDE:Q9FG71PRO:PR:Q9FG71
ProteinModelPortal:Q0WW87ProteinModelPortal:Q9FG71Proteomes:UP000006548RefSeq:NP_568832.1STRING:3702.AT5G55940.1TAIR:AT5G55940tair10-symbols:emb2731
UniGene:At.20183UniGene:At.29668UniGene:At.49180UniProt:Q0WW87UniProt:Q9FG71
Coordinates (TAIR10) chr5:-:22656256..22657894
Molecular Weight (calculated) 22980.60 Da
IEP (calculated) 5.88
GRAVY (calculated) -0.14
Length 208 amino acids
Sequence (TAIR10)
(BLAST)
001: MGMGSNGELK YEISQNAYIK LVLHSLRHKT AAVNGVLVGR ISPKDDGVVE ISDSVPLFHS NLALLPPLEI SLIMIEEHYV AQGLSIVGYF HANERFDDVE
101: LCGVAKNIGD HISRYFPQAP ILLLNNKKLE ALSKGKERSP VMQLCVKDAS KNWRVVGADG GSKLLLKEPS ANVVLSDYIS SEKWKDVTDV DDHLDDVTKD
201: WLNPGLFN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)