suba logo
AT5G55900.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
cytosol 0.920
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Sucrase/ferredoxin-like family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Sucrase/ferredoxin-like family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Sucraseferredoxin-like (InterPro:IPR009737), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: Sucrase/ferredoxin-like family protein (TAIR:AT4G26620.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IG3WeggNOG:ENOG410ZGFFEMBL:AB026659EMBL:BT029742EMBL:CP002688EnsemblPlants:AT5G55900EnsemblPlants:AT5G55900.1
entrez:835688Gene3D:3.40.30.10GeneID:835688Gramene:AT5G55900.1hmmpanther:PTHR31902hmmpanther:PTHR31902:SF1HOGENOM:HOG000239441
InterPro:IPR009737InterPro:IPR012336InterPro:IPR030108KEGG:ath:AT5G55900OMA:WLETWERPANTHER:PTHR31902:SF1Pfam:PF06999
PhylomeDB:Q9FG75Proteomes:UP000006548RefSeq:NP_200401.1SMR:Q9FG75SUPFAM:SSF52833TAIR:AT5G55900UniGene:At.29415
UniProt:Q9FG75
Coordinates (TAIR10) chr5:+:22637612..22639602
Molecular Weight (calculated) 45733.80 Da
IEP (calculated) 5.34
GRAVY (calculated) -0.37
Length 413 amino acids
Sequence (TAIR10)
(BLAST)
001: MGSGRYLDDP LTFTRNPPSS SSPITESSFL AESISRSGSF ESGSLRGGDG DCFSDVDFAL DKLAGTVQFY ERHVFLCYKK PSVWPARIEA SEFDRLPRLL
101: SSVISARKSS MKKETLLTIC EGHDGSETSN GDVLIFPDMI RYRRLTHFDV DTFVEEVLVK GVEWLPGNPE SLSSSYVFVC CHGSRDRRCG VCGPSLVSRF
201: REEIDSCGLR GEVSVSPCSH IGGHKYTGDV IIYGLNINQR VTGHWYGCVT LEDVPLLLEQ HINKGEIVDR LWRGEMGLPE EDQKKTQEQR LQLNSEKISN
301: REVTQESVNN SICCQSRAVP ELNGSGCQQN GNSSYCLEEI HTEKNTSERV TSVKNASLRI GSSENGSSGG FKVCAVMSMW LETWEREDTY AALAVACAAA
401: SVAIAYNCYK QLK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)