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AT5G55850.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.999
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RPM1-interacting protein 4 (RIN4) family protein
Curator
Summary (TAIR10)
NOI protein
Computational
Description (TAIR10)
NOI; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to nitrate; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RPM1-interacting protein 4, defence response (InterPro:IPR008700); BEST Arabidopsis thaliana protein match is: RPM1-interacting protein 4 (RIN4) family protein (TAIR:AT2G04410.1); Has 284 Blast hits to 283 proteins in 36 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 282; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J1WTeggNOG:ENOG410Y7RTEMBL:CP002688EnsemblPlants:AT5G55850
EnsemblPlants:AT5G55850.1entrez:835679ExpressionAtlas:F4K693GeneID:835679
Gramene:AT5G55850.1hmmpanther:PTHR33159InterPro:IPR008700PaxDb:F4K693
Pfam:PF05627PRIDE:F4K693Proteomes:UP000006548RefSeq:NP_200396.2
STRING:3702.AT5G55850.2TAIR:AT5G55850tair10-symbols:NOIUniGene:At.9528
UniProt:F4K693
Coordinates (TAIR10) chr5:+:22603617..22604951
Molecular Weight (calculated) 12221.90 Da
IEP (calculated) 10.37
GRAVY (calculated) -0.43
Length 114 amino acids
Sequence (TAIR10)
(BLAST)
001: MSDKGRPLPK FGEWDVNDPA SAEGFTVIFN KARDEKKTGG KPGSPGKSSE GHVKSGGGDP SKPQPVKKMA LLHASSSCGL LTDTKMDLLA AKKKVTVLTH
101: LKAMVLFMFY CRLS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)