AT5G55820.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
CONTAINS InterPro DOMAIN/s: Inner centromere protein, ARK-binding region (InterPro:IPR005635); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:22586287..22594035 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 203032.00 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 5.09 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.83 | ||||||||||||||||||||||||||||
| Length | 1826 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MIRDSENKTT TAKVLKDREK RHRMKKSRSS AMFSVKENPR GKTANVKIEN LFVQIFERKR RIVEQVQQQV DLYDQHLASK CLLAGVSPPS WLWSPSLPSQ 0101: TSELNKEEII SELLFPSSRP SIVCPSSRPF SYQRPVRFLA DNVVRQDLTS VVNNPLEEQL LEEEPQHNLS HNLVRQVSNH SHEQDVNIAS PRDVHEKERL 0201: PESVSIDCRE NQSCSSPEHS KNQRVETNLD ATSPGCSQGE KVPKCVSTTG CKRKSSSLGY CQEEIEPDTC IDPGLSLAKM QRSRSRQKAL ELRSSAKASK 0301: SRSNSRNELK PSPGGDIGFG IASLRSDSVS EIKLFKHDEN DEECREEVEN SNSQGKRGDQ CIKISVPTES FTLHHEVDSV SISSSGDAYA SIVPECLLES 0401: GHVNDIDILQ SIETIDEASG KVDEQVDDPK SRSCYETAYL DGSTRSKSSI QDNSKRKHQK SSNSFSGNFL LTNSNPSHWA DHEVELPQAI TTTSEVSMVT 0501: DAGTSIFQSE IIARSRSNAR ENRSKTEHSG SVESSSINLE PRDSIPVLQG SHVKDSLNPS SVDAEGLVVE NITSSDQSKE TGECVDTNRC SSAERVSQTG 0601: ISPDETTFAG AIQDSISQIE LLSFVESSSI ELQSRHSVKQ SDDESVLLKP VTVNGEALLV EEDNNGESTE ISGISKSRSL SQTDITVVLP VVVESILNES 0701: GTPEKLIDHS KRCDISCGSK EVQPLGSLTE VGSNQSHGII SRARSSLIEE ESANDYKALS DGSNHKSADK QLEVREGNSL LRTPDRPVFV DNFDEVPENS 0801: REKSSMEKVP TPAPTARVFD VPSLTDSGVN LSANNEMNDI EDHNGLNIEM VAEMESYASH PGLKVGENEP TESNTFTGHI DALTKRPQHE TSSEKAVPPI 0901: KRDVTCTEAD ECHDLESPIQ EFFCSSSPMG GSMRQNKRRR ILEKPTRREL SSSPGGDILE SDYVREAVHH REEAACHNVD NYDVELQKLI GSASSHHYSV 1001: ELQKMIGSAS SAELRFEEGD ILESDYVREA VHHREEAACH NVDNYDVELQ KLIGSASSHH YSVELQKMIG SASSAELRFE ESYLLKEAGL MSPASLSYRT 1101: EQLSVQRSQI APDHRVGSEN INFFPYAGET SHGLASCIVR DSDSSPCLTP LGLISSDDGS PPVLEGFIIQ TDDENQSGSK NQLNHDSFQL PRTTAESAAM 1201: IEQICKSACM NTPSLHLAKT FKFDEKLDLD QSVSTELFDG MFFSQNLEGS SVFDNLGINH DYTGRSYTDS LPGTGSSAEA RNPCMSPTEK LWYRSLQKSS 1301: SSEKRSTQTP DLPCISEENE NIEEEAENLC TNTPKSMRSE KRGSSIPELP CIAEENENID EISDAVNEAS GSERENVSAE RKPLGDVNED PMKLLPSVSE 1401: AKIPADRQSL DSVSTAFSFS AKCNSVKSKV GKLSNRRFTG KGKENQGGAG AKRNVKPPSS RFSKPKLSCN SSLTTVGPRL QEKEPRHNNI VSNITSFVPL 1501: VQQQKPAPAL ITGKRDVKVK ALEAAEASKR IAEQKENDRK LKKEAMKLER AKQEQENLKK QEIEKKKKEE DRKKKEAEMA WKQEMEKKKK EEERKRKEFE 1601: MADRKRQREE EDKRLKEAKK RQRIADFQRQ QREADEKLQA EKELKRQAMD ARIKAQKELK EDQNNAEKTR QANSRIPAVR SKSNSSDDTN ASRSSRENDF 1701: KVISNPGNMS EEANMGIEEM EESYNISPYK CSDDEDEEED DNDDMSNKKF APTWASKSNV RLAVISQQNI DPDVTFPAKS ACDISNGSVD FPSGKSQVLK 1801: ARDLFFFNIT KFSLLFNVDF VKITFG |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)