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AT5G55820.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
CONTAINS InterPro DOMAIN/s: Inner centromere protein, ARK-binding region (InterPro:IPR005635); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IKDWeggNOG:ENOG410YJAKEMBL:AB009050EMBL:CP002688EnsemblPlants:AT5G55820EnsemblPlants:AT5G55820.1entrez:835676
GeneID:835676GO:GO:0009553GO:GO:0048316Gramene:AT5G55820.1hmmpanther:PTHR32093hmmpanther:PTHR32093:SF36HOGENOM:HOG000152557
InterPro:IPR005635InterPro:IPR033261KEGG:ath:AT5G55820ncoils:CoilOMA:PCIAEENPANTHER:PTHR32093:SF36Pfam:PF03941
Proteomes:UP000006548RefSeq:NP_200393.1STRING:3702.AT5G55820.1TAIR:AT5G55820UniGene:At.28596UniGene:At.55569UniProt:Q9FM57
Coordinates (TAIR10) chr5:+:22586287..22594035
Molecular Weight (calculated) 203032.00 Da
IEP (calculated) 5.09
GRAVY (calculated) -0.83
Length 1826 amino acids
Sequence (TAIR10)
(BLAST)
0001: MIRDSENKTT TAKVLKDREK RHRMKKSRSS AMFSVKENPR GKTANVKIEN LFVQIFERKR RIVEQVQQQV DLYDQHLASK CLLAGVSPPS WLWSPSLPSQ
0101: TSELNKEEII SELLFPSSRP SIVCPSSRPF SYQRPVRFLA DNVVRQDLTS VVNNPLEEQL LEEEPQHNLS HNLVRQVSNH SHEQDVNIAS PRDVHEKERL
0201: PESVSIDCRE NQSCSSPEHS KNQRVETNLD ATSPGCSQGE KVPKCVSTTG CKRKSSSLGY CQEEIEPDTC IDPGLSLAKM QRSRSRQKAL ELRSSAKASK
0301: SRSNSRNELK PSPGGDIGFG IASLRSDSVS EIKLFKHDEN DEECREEVEN SNSQGKRGDQ CIKISVPTES FTLHHEVDSV SISSSGDAYA SIVPECLLES
0401: GHVNDIDILQ SIETIDEASG KVDEQVDDPK SRSCYETAYL DGSTRSKSSI QDNSKRKHQK SSNSFSGNFL LTNSNPSHWA DHEVELPQAI TTTSEVSMVT
0501: DAGTSIFQSE IIARSRSNAR ENRSKTEHSG SVESSSINLE PRDSIPVLQG SHVKDSLNPS SVDAEGLVVE NITSSDQSKE TGECVDTNRC SSAERVSQTG
0601: ISPDETTFAG AIQDSISQIE LLSFVESSSI ELQSRHSVKQ SDDESVLLKP VTVNGEALLV EEDNNGESTE ISGISKSRSL SQTDITVVLP VVVESILNES
0701: GTPEKLIDHS KRCDISCGSK EVQPLGSLTE VGSNQSHGII SRARSSLIEE ESANDYKALS DGSNHKSADK QLEVREGNSL LRTPDRPVFV DNFDEVPENS
0801: REKSSMEKVP TPAPTARVFD VPSLTDSGVN LSANNEMNDI EDHNGLNIEM VAEMESYASH PGLKVGENEP TESNTFTGHI DALTKRPQHE TSSEKAVPPI
0901: KRDVTCTEAD ECHDLESPIQ EFFCSSSPMG GSMRQNKRRR ILEKPTRREL SSSPGGDILE SDYVREAVHH REEAACHNVD NYDVELQKLI GSASSHHYSV
1001: ELQKMIGSAS SAELRFEEGD ILESDYVREA VHHREEAACH NVDNYDVELQ KLIGSASSHH YSVELQKMIG SASSAELRFE ESYLLKEAGL MSPASLSYRT
1101: EQLSVQRSQI APDHRVGSEN INFFPYAGET SHGLASCIVR DSDSSPCLTP LGLISSDDGS PPVLEGFIIQ TDDENQSGSK NQLNHDSFQL PRTTAESAAM
1201: IEQICKSACM NTPSLHLAKT FKFDEKLDLD QSVSTELFDG MFFSQNLEGS SVFDNLGINH DYTGRSYTDS LPGTGSSAEA RNPCMSPTEK LWYRSLQKSS
1301: SSEKRSTQTP DLPCISEENE NIEEEAENLC TNTPKSMRSE KRGSSIPELP CIAEENENID EISDAVNEAS GSERENVSAE RKPLGDVNED PMKLLPSVSE
1401: AKIPADRQSL DSVSTAFSFS AKCNSVKSKV GKLSNRRFTG KGKENQGGAG AKRNVKPPSS RFSKPKLSCN SSLTTVGPRL QEKEPRHNNI VSNITSFVPL
1501: VQQQKPAPAL ITGKRDVKVK ALEAAEASKR IAEQKENDRK LKKEAMKLER AKQEQENLKK QEIEKKKKEE DRKKKEAEMA WKQEMEKKKK EEERKRKEFE
1601: MADRKRQREE EDKRLKEAKK RQRIADFQRQ QREADEKLQA EKELKRQAMD ARIKAQKELK EDQNNAEKTR QANSRIPAVR SKSNSSDDTN ASRSSRENDF
1701: KVISNPGNMS EEANMGIEEM EESYNISPYK CSDDEDEEED DNDDMSNKKF APTWASKSNV RLAVISQQNI DPDVTFPAKS ACDISNGSVD FPSGKSQVLK
1801: ARDLFFFNIT KFSLLFNVDF VKITFG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)