suba logo
AT5G55750.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
plasma membrane 0.947
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : hydroxyproline-rich glycoprotein family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
hydroxyproline-rich glycoprotein family protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
EMBL:AB009050EMBL:CP002688EnsemblPlants:AT5G55750EnsemblPlants:AT5G55750.1entrez:835669GeneID:835669GO:GO:0016021
Gramene:AT5G55750.1KEGG:ath:AT5G55750OMA:STMYSPPProteomes:UP000006548RefSeq:NP_200386.1TAIR:AT5G55750TMHMM:TMhelix
UniGene:At.29427UniProt:Q9FM63
Coordinates (TAIR10) chr5:-:22564838..22566021
Molecular Weight (calculated) 18296.80 Da
IEP (calculated) 8.63
GRAVY (calculated) -0.29
Length 175 amino acids
Sequence (TAIR10)
(BLAST)
001: MHKQIMSLVD TFSKLVQKAI IDAFTTWARA IECNCNSGAC NSLVGATYYP SCKPRLQRYS PYGNPPPPSP QYSPPPPPSQ SSPPRSRCPP VPTTGCCNQP
101: PGPPPSTMYS PPYPYFYTPP YPYGTIGGGG QGGGGQGGGG GGAEGGTTGS AMAYYSSSIP VYVLMLVLAN AFIVF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)