AT5G55740.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 ASURE: plastid What is SUBAcon? |
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| Experimental Localisations and PPI |
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| FP Images |
Arabidopsis cell culture (mitochondrial marker)
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a member of the E+ subgroup of the PPR protein family, containing the E and E+ motifs following a tandem array of PPR motifs. It also contains an unknown motif consisting of 15 aa, which is highly conserved in some PPR proteins, including CRR4. CRR21 is involved in RNA editing of the site 2 of ndhD (ndhD-2),which encodes a subunit of the NDH complex. The RNA editing changes aa 128 from Ser to Leu. Mutants have impaired NDH complex activity. | ||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
chlororespiratory reduction 21 (CRR21); INVOLVED IN: mRNA modification; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT4G21300.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:22561941..22564433 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 92142.00 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.22 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.02 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 830 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MASLPFNTIP NKVPFSVSSK PSSKHHDEQA HSPSSTSYFH RVSSLCKNGE IKEALSLVTE MDFRNLRIGP EIYGEILQGC VYERDLSTGK QIHARILKNG 101: DFYARNEYIE TKLVIFYAKC DALEIAEVLF SKLRVRNVFS WAAIIGVKCR IGLCEGALMG FVEMLENEIF PDNFVVPNVC KACGALKWSR FGRGVHGYVV 201: KSGLEDCVFV ASSLADMYGK CGVLDDASKV FDEIPDRNAV AWNALMVGYV QNGKNEEAIR LFSDMRKQGV EPTRVTVSTC LSASANMGGV EEGKQSHAIA 301: IVNGMELDNI LGTSLLNFYC KVGLIEYAEM VFDRMFEKDV VTWNLIISGY VQQGLVEDAI YMCQLMRLEK LKYDCVTLAT LMSAAARTEN LKLGKEVQCY 401: CIRHSFESDI VLASTVMDMY AKCGSIVDAK KVFDSTVEKD LILWNTLLAA YAESGLSGEA LRLFYGMQLE GVPPNVITWN LIILSLLRNG QVDEAKDMFL 501: QMQSSGIIPN LISWTTMMNG MVQNGCSEEA ILFLRKMQES GLRPNAFSIT VALSACAHLA SLHIGRTIHG YIIRNLQHSS LVSIETSLVD MYAKCGDINK 601: AEKVFGSKLY SELPLSNAMI SAYALYGNLK EAIALYRSLE GVGLKPDNIT ITNVLSACNH AGDINQAIEI FTDIVSKRSM KPCLEHYGLM VDLLASAGET 701: EKALRLIEEM PFKPDARMIQ SLVASCNKQR KTELVDYLSR KLLESEPENS GNYVTISNAY AVEGSWDEVV KMREMMKAKG LKKKPGCSWI QITGEEGVHV 801: FVANDKTHTR INEIQMMLAL LLYDMGTGSK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)