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AT5G55720.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pectin lyase-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pectin lyase-like superfamily protein; FUNCTIONS IN: lyase activity, pectate lyase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), AmbAllergen (InterPro:IPR018082), Pectate lyase/Amb allergen (InterPro:IPR002022), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT4G13710.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G55720-MONOMERCAZy:PL1EC:4.2.2.2eggNOG:COG3866eggNOG:ENOG410IEMIEMBL:AB009050EMBL:CP002688
EnsemblPlants:AT5G55720EnsemblPlants:AT5G55720.1entrez:835666Gene3D:2.160.20.10GeneID:835666Genevisible:Q9FM66GO:GO:0030570
GO:GO:0045490GO:GO:0046872Gramene:AT5G55720.1hmmpanther:PTHR31683hmmpanther:PTHR31683:SF33HOGENOM:HOG000237948InParanoid:Q9FM66
InterPro:IPR002022InterPro:IPR011050InterPro:IPR012334InterPro:IPR018082KEGG:00040+4.2.2.2KEGG:ath:AT5G55720KO:K01728
OMA:TISNSYMPaxDb:Q9FM66Pfam:PF00544Pfam:Q9FM66PhylomeDB:Q9FM66PRIDE:Q9FM66PRINTS:PR00807
PRO:PR:Q9FM66ProteinModelPortal:Q9FM66Proteomes:UP000006548RefSeq:NP_200383.1SMART:SM00656SMR:Q9FM66STRING:3702.AT5G55720.1
SUPFAM:SSF51126TAIR:AT5G55720UniGene:At.29429UniPathway:UPA00545UniProt:Q9FM66
Coordinates (TAIR10) chr5:+:22556047..22557496
Molecular Weight (calculated) 43684.20 Da
IEP (calculated) 4.89
GRAVY (calculated) -0.31
Length 392 amino acids
Sequence (TAIR10)
(BLAST)
001: MSIVCTFFLF LLNTSFAFAF AIPKPPIVRR LSTTVTSNST ASSCSANGNP IDECWRCDEN WKDNRKNLAD CAVGFGRDSI GGRAGEFYTV TDSGDDNPLN
101: PTPGTLRYAA TQDQPLWIIF DRDMVIQLKQ DLQVASYKTI DGRGNNVQIA YGPCLTLYKV SNIIINNLYI HDCVPVKRNA LSSLGGYSDG DGISIFESRD
201: IWIDHCTLEK CYDGLIDAVN GSTDITISNS YMLNHNEVML LGHSDEYSGD RDMRVTIAFN YFGEGLVQRM PRCRHGYFHI VNNIYRDWKM YAIGGSANPT
301: IFSQGNVFIA SNNQFTKEVT KRESADGDEE WKEWNWKSEG DEMVNGAFFT PSGKEDSPSY AKFSSMVARP ASLLKTTHPS VGVLSCEIDQ AC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)