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AT5G55710.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: Uncharacterised conserved protein ycf60 (TAIR:AT2G47840.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IGP2eggNOG:ENOG4111UMDEMBL:AB009050EMBL:AY087311
EMBL:BT001996EMBL:BT006255EMBL:CP002688EnsemblPlants:AT5G55710
EnsemblPlants:AT5G55710.1entrez:835665GeneID:835665Genevisible:Q9FM67
GO:GO:0009507GO:GO:0009535GO:GO:0009579GO:GO:0009706
GO:GO:0015031GO:GO:0016021Gramene:AT5G55710.1hmmpanther:PTHR33510
hmmpanther:PTHR33510:SF5HOGENOM:HOG000012384InParanoid:Q9FM67InterPro:IPR005691
KEGG:ath:AT5G55710OMA:TMQAIVLPaxDb:Q9FM67Pfam:PF16166
Pfam:Q9FM67PhylomeDB:Q9FM67PRIDE:Q9FM67PRO:PR:Q9FM67
Proteomes:UP000006548RefSeq:NP_200382.1STRING:3702.AT5G55710.1TAIR:AT5G55710
TMHMM:TMhelixUniGene:At.49179UniGene:At.71092UniProt:Q9FM67
Coordinates (TAIR10) chr5:-:22554995..22555624
Molecular Weight (calculated) 23653.10 Da
IEP (calculated) 8.66
GRAVY (calculated) 0.52
Length 209 amino acids
Sequence (TAIR10)
(BLAST)
001: MAIISQFFAP LPSLTGTLTL TGRSFLPLNL DTQFPKPRLS RDRAATLVLQ SKGDDSVDAS DRIISAVCYF YPFFDGIQYG KFIITQYQPF QILIQPLFPA
101: IRAFKSFPFN GFLIFITLYF VVVRNPNFSR YVRFNTMQAI VLDVLLIFPD LLERSFNPRD GFGLDVVMSL DSTVFLFLLV SLIYGFSACL FGLTPRLPLV
201: AEAADRQVL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)