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AT5G55690.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : MADS-box transcription factor family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
MADS-box transcription factor family protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: central cell; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: AGAMOUS-like 82 (TAIR:AT5G58890.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5068eggNOG:KOG0014EMBL:AB009050EMBL:AY141214EMBL:BT026042EMBL:CP002688EnsemblPlants:AT5G55690
EnsemblPlants:AT5G55690.1entrez:835663GeneID:835663GO:GO:0003677GO:GO:0003700GO:GO:0005634GO:GO:0006351
Gramene:AT5G55690.1hmmpanther:PTHR11945hmmpanther:PTHR11945:SF176IntAct:Q9FM69InterPro:IPR002100KEGG:ath:AT5G55690ncoils:Coil
OMA:GRKMVKMPfam:PF00319Pfscan:PS50066PhylomeDB:Q9FM69PRINTS:PR00404PROSITE:PS50066Proteomes:UP000006548
RefSeq:NP_200380.1SMART:SM00432SMR:Q9FM69STRING:3702.AT5G55690.1SUPFAM:SSF55455TAIR:AT5G55690UniGene:At.64303
UniProt:Q9FM69
Coordinates (TAIR10) chr5:-:22548790..22549623
Molecular Weight (calculated) 31701.60 Da
IEP (calculated) 7.84
GRAVY (calculated) -0.60
Length 277 amino acids
Sequence (TAIR10)
(BLAST)
001: MGRKMVKMTR ITNEKTRITT YKKRKACLYK KASEFSTLCG VDTCVIVYGP SRAGDEMVME PELWPKDGSK VREILTKYRD TASSSCTKTY TVQECLEKNN
101: TKVEKPTIAT KYPTWDKKLD QCSLNDLYAV FMAVENKIQE ATNRNQTFPD TSCWSNDQLG LCGYNRQCFE QYQLFPLPTM DYNGLSFFPF NNQMTSNTAE
201: VSSFSNVTEP MIANGQSLFY GSCSDGPYGP MVQRTAYMEP IHWGLGNSMF NNVKQFQDYP FRFAQVNDLE DSSKLSM
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)