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AT5G55600.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein; FUNCTIONS IN: RNA binding, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tudor-like, plant (InterPro:IPR014002), Agenet (InterPro:IPR008395), Bromo adjacent homology (BAH) domain (InterPro:IPR001025); BEST Arabidopsis thaliana protein match is: agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein (TAIR:AT1G68580.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410II0JeggNOG:ENOG410YDA7EMBL:AF462815EMBL:BT001005EMBL:CP002688EnsemblPlants:AT5G55600EnsemblPlants:AT5G55600.1
EnsemblPlants:AT5G55600.2EnsemblPlants:AT5G55600.3entrez:835654GeneID:835654GO:GO:0003682Gramene:AT5G55600.1Gramene:AT5G55600.2
Gramene:AT5G55600.3hmmpanther:PTHR31917hmmpanther:PTHR31917:SF13InterPro:IPR001025InterPro:IPR008395InterPro:IPR014002KEGG:ath:AT5G55600
OMA:YVVSEEFPfam:PF01426Pfam:PF05641Pfscan:PS51038PhylomeDB:Q8W109PROSITE:PS51038Proteomes:UP000006548
RefSeq:NP_001119443.1RefSeq:NP_001190547.1RefSeq:NP_200371.2SMART:SM00439SMART:SM00743SMR:Q8W109TAIR:AT5G55600
UniGene:At.29433UniGene:At.6552UniProt:Q8W109
Coordinates (TAIR10) chr5:-:22522232..22524796
Molecular Weight (calculated) 75435.00 Da
IEP (calculated) 5.87
GRAVY (calculated) -0.60
Length 663 amino acids
Sequence (TAIR10)
(BLAST)
001: MCENDHHFVE WKEHFVSQER GNRVVHYFLK DSAGESILAV IGTERSVRHM FYVVSEEFVR IHGPENSIHS GFKWRSRREV VDWLTSMLSK QSTQGNWSKS
101: PKCESGESNG SPEFPSNGFT AQRAQASEEV RLPINLIIHS WEIMWSGAPW MCGKQLKHYP SFCRNGTTIG VQSFVFVLSK GEDRYVAYLE DMYEDKRGLK
201: KVKVRWFHYT KEVKGAVALK NPNPKEVFIT PHSQVISAEC VDGPATVLTR EHYEECVASF PNSLLARVHM CYRQLRNSKV KPFDLSKLRG YLDQPIMSCL
301: SSMEAGPVDC AMNIEEDEEW SEGENVMVGA ERSMKKRARI MSDHLLTTYE SSCKRLKLNA SGKRFPSPTN VQKHPCYNGV VKTDAKIEFL CQDSGIRGCW
401: FRCTVLDVSR KQVKLQYDDI EDEDGYGNLE EWVPAFKSAM PDKLGIRLSN RPTIRPAPRD VKTAYFDLTI GEAVDAWWND GWWEGVVIAT GKPDTEDLKI
501: YIPGENLCLT VLRKDIRISR DWVGDSWVDI DPKPEILAIV SSDSSSESKL SMLSTLSKDT KAKPSAMPNI VEEAEPEGEK AYNSLLGEQN KEHKDVVVKE
601: DDENKLSKEE DKEVGSNETK TYVNHENTVE DHKEDDVTLN DEKARKSESV FTLSKTTTTL VTT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)