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AT5G55550.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.999
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RNA-binding (RRM/RBD/RNP motifs) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT4G26650.2); Has 29827 Blast hits to 19374 proteins in 849 species: Archae - 8; Bacteria - 2743; Metazoa - 14322; Fungi - 3285; Plants - 6229; Viruses - 3; Other Eukaryotes - 3237 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410YA8ZeggNOG:KOG4205EMBL:CP002688EnsemblPlants:AT5G55550EnsemblPlants:AT5G55550.1EnsemblPlants:AT5G55550.4entrez:835649
ExpressionAtlas:F4K4W6Gene3D:3.30.70.330GeneID:835649GO:GO:0000166GO:GO:0003676Gramene:AT5G55550.1Gramene:AT5G55550.4
hmmpanther:PTHR24012hmmpanther:PTHR24012:SF433InterPro:IPR000504InterPro:IPR012677KEGG:ath:AT5G55550KO:K14411Pfam:PF00076
Pfscan:PS50102PROSITE:PS50102Proteomes:UP000006548RefSeq:NP_001190546.1RefSeq:NP_851195.1SMART:SM00360SMR:F4K4W6
STRING:3702.AT5G55550.2SUPFAM:SSF54928TAIR:AT5G55550UniGene:At.6910UniProt:F4K4W6
Coordinates (TAIR10) chr5:-:22502077..22503658
Molecular Weight (calculated) 48836.20 Da
IEP (calculated) 6.87
GRAVY (calculated) -0.63
Length 448 amino acids
Sequence (TAIR10)
(BLAST)
001: MESDLGKLFI GGISWDTDEE RLRDYFSNYG DVVEAVIMRD RATGRARGFG FIVFADPCVS ERVIMDKHII DGRTVEAKKA VPRDDQQVLK RHASPIHLMS
101: PVHGGGGRTK KIFVGGLPSS ITEEEFKNYF DQFGTIADVV VMYDHNTQRP RGFGFITFDS DDAVDRVLHK TFHELNGKLV EVKRAVPKEI SPVSNIRSPL
201: ASGVNYGGGS NRMPANSYFN NFAPGPGFYN SLGPVGRRFS PVIGSGRNAV SAFGLGLNHD LSLNLNPSCD GTSSTFGYNR IPSNPYFNGA SPNRYTSPIG
301: HNRTESPYNS NNRDLWGNRT DTAGPGWNLN VSNGNNRGNW GLPSSSAVSN DNNGFGRNYG TSSGLSSSPF NGFEGSIGEL YRGGSVYSDS TWQQQQLPSQ
401: SSHELDNLSR AYGYDIDNVG SDPSANDPET YNGSYNVGNR QTNRGIAA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)