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AT5G55530.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Calcium-dependent lipid-binding (CaLB domain) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Calcium-dependent lipid-binding (CaLB domain) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: Calcium-dependent lipid-binding (CaLB domain) family protein (TAIR:AT1G50570.2); Has 714 Blast hits to 549 proteins in 143 species: Archae - 0; Bacteria - 238; Metazoa - 96; Fungi - 112; Plants - 147; Viruses - 6; Other Eukaryotes - 115 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IF02eggNOG:ENOG410YHFCEMBL:BT020521EMBL:BT021091
EMBL:CP002688EnsemblPlants:AT5G55530EnsemblPlants:AT5G55530.1EnsemblPlants:AT5G55530.2
EnsemblPlants:AT5G55530.3entrez:835647Gene3D:2.60.40.150GeneID:835647
Gramene:AT5G55530.1Gramene:AT5G55530.2Gramene:AT5G55530.3hmmpanther:PTHR31208
hmmpanther:PTHR31208:SF2InterPro:IPR000008KEGG:ath:AT5G55530OMA:DVMAIPS
Pfam:PF00168Proteomes:UP000006548RefSeq:NP_200364.2RefSeq:NP_974935.1
RefSeq:NP_974936.1SMART:SM00239SMR:Q5HZ03STRING:3702.AT5G55530.1
SUPFAM:SSF49562TAIR:AT5G55530UniGene:At.22993UniProt:Q5HZ03
Coordinates (TAIR10) chr5:+:22494439..22495656
Molecular Weight (calculated) 44128.90 Da
IEP (calculated) 4.48
GRAVY (calculated) -0.58
Length 405 amino acids
Sequence (TAIR10)
(BLAST)
001: MDSPQSVVSP FKIGESENEN SNSVQSSGNQ SNGINSNGKD SKSCGRQDLV GALEVYVHQA RDIHNICIYH KQDVYAKLCL TSDPDKSVST KIINGGGRNP
101: VFDDNVKLDV RVLDTSLKCE IYMMSRVKNY LEDQLLGFTL VPMSELLFKN GKLEKEFSLS STDLYHSPAG FVQLSLSYYG SYPDVMAIPS MPSSVSIDET
201: TKDPEGSESV PGELDKIEFP DPNVANENEK MVSEYFGISC STIDSETSDS LVTSDAENHV TNSVTSILKQ DSPESSNATN GAASPHASAH SATETPNHEH
301: LSVVNSKASS QESESEASGE TSEEKTVKSV LTVKVEPESK VVQQDIVDMY MKSMQQFTDS LAKMKLPLDI DSPTKSENSS SDSQKLPTPK SNNGSRVFYG
401: SRPFF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)