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AT5G55520.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
CONTAINS InterPro DOMAIN/s: Kinesin-related protein (InterPro:IPR010544); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G26660.1); Has 32425 Blast hits to 20462 proteins in 1550 species: Archae - 335; Bacteria - 3392; Metazoa - 16996; Fungi - 2645; Plants - 1561; Viruses - 54; Other Eukaryotes - 7442 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J262eggNOG:ENOG410YFITEMBL:CP002688EnsemblPlants:AT5G55520
EnsemblPlants:AT5G55520.1entrez:835646ExpressionAtlas:F4K4W1GeneID:835646
GO:GO:0003777GO:GO:0007018Gramene:AT5G55520.1hmmpanther:PTHR24115
hmmpanther:PTHR24115:SF529InParanoid:F4K4W1InterPro:IPR010544InterPro:IPR027640
ncoils:CoilOMA:HKTEMSTPANTHER:PTHR24115PaxDb:F4K4W1
Pfam:PF06548PRIDE:F4K4W1ProteinModelPortal:F4K4W1Proteomes:UP000006548
RefSeq:NP_200363.2STRING:3702.AT5G55520.1TAIR:AT5G55520UniGene:At.50716
UniProt:F4K4W1
Coordinates (TAIR10) chr5:-:22488205..22491187
Molecular Weight (calculated) 91318.30 Da
IEP (calculated) 5.36
GRAVY (calculated) -0.93
Length 805 amino acids
Sequence (TAIR10)
(BLAST)
001: MKTMKSPAKI GESRFLGNIS TSSIRNLLPR SIYAKQKSIQ NADTKKSFRS NDENSPPCDP NIQTNHHLNN DDDLHLKKKS PQKVFPSATQ QILPKESTQF
101: EAKSVLVTRA NSMANEITEE DDSLGHQIRD LKEELIRTKS DGYKPDGSKN GYFVRESLSQ LRNSINKSLV MSCENRQGSE KETMYEEEYD DDVVELSKHI
201: NKFHTNCDSD DLRDSIQSSF ASASGCEADS MSGDEICSVD KHKDHKDCAL ADSGPSAVGN GISISLPHQS RILEEPPLSE SPKIRNFRKS VAASTKFQAS
301: PRNVTESSST GNRKPLSPTD SLAASLQRGL NIIDCHQRSS LSNRSSVSFS FGHLSLKPCD EADDNLSASV KLLQKDRPKE GGSSILLCLS CRQKLDQEAQ
401: GGYKAIEEAC VDEKHLKNMC VEQATKIEQL TYQLDEYKKN ALQESSKVTQ QLMKSDDGED ETEVVKETYE TNQRSEEFGK VRIDLSEKEA LLKEIAELKS
501: KLQPTKSTDN VRSSLLLRSF QMRKSIDFTK NTENNSEALE EERERWTEME SEWISLTDDL RMDIDSHRRH AEDLEIELKK EKMATEELND ALSRAMLGHS
601: RFIEQYTELQ EKYDELDERH SVTMAGIVDV KKAAAKAALK GRHGKRFAKA FSAELTAIRA EKEKEREFLK KENKGLKIQL RDTVEAVQAA GELLVRLREA
701: EQAVQSSEER FGIMEEENDK LKQQMEKLKS KHKTEMSTMK QYLAESKLPG SALEAWFKEN EQEEEEEHVS SSEHRTGVVS YDNYTDDQAW RSEFGAIYQD
801: HDHHY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)