suba logo
AT5G55500.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
golgi 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:22430844 (2012): Golgi
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : beta-1,2-xylosyltransferase
Curator
Summary (TAIR10)
Encodes a beta-1,2-xylosyltransferase that is glycosylated at two positions.
Computational
Description (TAIR10)
beta-1,2-xylosyltransferase (XYLT); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G55500-MONOMERBioCyc:MetaCyc:AT5G55500-MONOMERBioGrid:20887BRENDA:2.4.2.38
CAZy:GT61EC:2.4.2.38eggNOG:ENOG410ZHQAeggNOG:KOG4698
EMBL:AB015479EMBL:AF272852EMBL:AF411785EMBL:AJ272121
EMBL:AJ277603EMBL:AY143907EMBL:CP002688EnsemblPlants:AT5G55500
EnsemblPlants:AT5G55500.1entrez:835643ExpressionAtlas:Q9LDH0GeneID:835643
Genevisible:Q9LDH0GO:GO:0000139GO:GO:0005794GO:GO:0005797
GO:GO:0006487GO:GO:0016021GO:GO:0031204GO:GO:0032580
GO:GO:0042285GO:GO:0050513Gramene:AT5G55500.1hmmpanther:PTHR20961
hmmpanther:PTHR20961:SF6HOGENOM:HOG000242888InParanoid:Q9LDH0InterPro:IPR007657
KEGG:ath:AT5G55500KO:K03714OMA:AHMNMKEPaxDb:Q9LDH0
Pfam:PF04577Pfam:Q9LDH0PhylomeDB:Q9LDH0PIR:T52649
PRIDE:Q9LDH0PRO:PR:Q9LDH0ProteinModelPortal:Q9LDH0Proteomes:UP000006548
RefSeq:NP_568825.1STRING:3702.AT5G55500.1TAIR:AT5G55500tair10-symbols:ATXYLT
tair10-symbols:XYLTTMHMM:TMhelixUniGene:At.1454UniPathway:UPA00378
UniProt:Q9LDH0UniProt:W8PUA9
Coordinates (TAIR10) chr5:+:22482386..22484417
Molecular Weight (calculated) 60238.00 Da
IEP (calculated) 7.67
GRAVY (calculated) -0.28
Length 534 amino acids
Sequence (TAIR10)
(BLAST)
001: MSKRNPKILK IFLYMLLLNS LFLIIYFVFH SSSFSPEQSQ PPHIYHVSVN NQSAIQKPWP ILPSYLPWTP PQRNLPTGSC EGYFGNGFTK RVDFLKPRIG
101: GGGEGSWFRC FYSETLQSSI CEGRNLRMVP DRIVMSRGGE KLEEVMGRKE EEELPAFRQG AFEVAEEVSS RLGFKRHRRF GGGEGGSAVS RRLVNDEMLN
201: EYMQEGGIDR HTMRDLVASI RAVDTNDFVC EEWVEEPTLL VTRFEYANLF HTVTDWYSAY VSSRVTGLPN RPHVVFVDGH CTTQLEETWT ALFSGIRYAK
301: NFTKPVCFRH AILSPLGYET ALFKGLSGEI DCKGDSAHNL WQNPDDKRTA RISEFGEMIR AAFGLPVNRH RSLEKPLSSS SSSASVYNVL FVRREDYLAH
401: PRHGGKVQSR LINEEEVFDS LHHWVATGST GLTKCGINLV NGLLAHMSMK DQVRAIQDAS VIIGAHGAGL THIVSATPNT TIFEIISVEF QRPHFELIAK
501: WKGLEYHAMH LANSRAEPTA VIEKLTEIMK SLGC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)