AT5G55400.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:golgi 0.483 cytosol 0.241 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Actin binding Calponin homology (CH) domain-containing protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Actin binding Calponin homology (CH) domain-containing protein; FUNCTIONS IN: actin binding; LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Actinin-type, actin-binding, conserved site (InterPro:IPR001589), Calponin-homology (InterPro:IPR016146), Calponin-like actin-binding (InterPro:IPR001715); BEST Arabidopsis thaliana protein match is: fimbrin 1 (TAIR:AT4G26700.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:22455535..22458950 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 79792.10 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.88 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.25 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 714 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSGFVGVIVS DPWLQSQLTQ VELRSLNSKF VALKNQSGKV TLEDLPSVLV KVKSLSSSFK EKEIKEILGG LGSDYESDDD LDFESFLKVY LNLRDKAADK 101: AGGGLKHSSS FLKAGTTTLH TINQSEKGSF VLHINRYLGD DPFLKQFLPL DPDSNDLYEL VKDGVLLCKL INIAVPGTID ERAINTKRVL NPWERNENHT 201: LCLNSAKAVG CSVVNIGTQD LAEGRPHLVL GLISQLIKIQ LLADLSLKKM PQLVELVEDN EDIEEFLRLP PEKVLLKWMN FHLKKGGYKK TVGNFSSDLK 301: DAQAYAYLLN VLAPEHCDPA TLNAEDDLER ANMVLEHAER MNCKRYLTAE EIVEGSSYLN LAFVAQIFHE RNGLSTDGRF SFAEMMTEDL QTCRDERCYR 401: LWINSLGIES YVNNVFEDVR NGWILLEVVD KVYPGSVNWK QASKPPIKMP FRKVENCNQV VKIGKEMRFS LVNVAGNDIV QGNKKLILGF LWQLMRTHML 501: QLLKSLRSRT RGKDMTDSEI ISWANRKVRI MGRKSQIESF KDKSLSSGLF FLDLLWAVEP RVVNWNLVTK GESDDEKRLN ATYIVSVARK LGCSVFLLPE 601: DIVEVNQKMI LILTASIMYW SLQQQSSSSE SSSSSSDSSS THSTTTTCTS TCTSTDASPA PSVTGEDEVS SLNGEVSSLT IEEDNEVSSL TIEEDNDADI 701: LSDITSISEE AANE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)