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AT5G55290.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
vacuole 0.761
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : ATPase, V0 complex, subunit E
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ATPase, V0 complex, subunit E; FUNCTIONS IN: hydrogen ion transmembrane transporter activity; INVOLVED IN: ATP hydrolysis coupled proton transport; LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, V0 complex, subunit E (InterPro:IPR008389); BEST Arabidopsis thaliana protein match is: ATPase, V0 complex, subunit E (TAIR:AT4G26710.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioGrid:20866eggNOG:ENOG41121M0eggNOG:KOG3500EMBL:AB010071
EMBL:AF372884EMBL:AK318957EMBL:AY057717EMBL:CP002688
EnsemblPlants:AT5G55290EnsemblPlants:AT5G55290.1EnsemblPlants:AT5G55290.2entrez:835622
GeneID:835622Genevisible:Q9FLN5GO:GO:0005773GO:GO:0005794
GO:GO:0015078GO:GO:0015991GO:GO:0016021GO:GO:0033179
Gramene:AT5G55290.1Gramene:AT5G55290.2hmmpanther:PTHR12263hmmpanther:PTHR12263:SF4
HOGENOM:HOG000265078InParanoid:Q9FLN5InterPro:IPR008389KEGG:ath:AT5G55290
KO:K02153OMA:FCTRICCPANTHER:PTHR12263PaxDb:Q9FLN5
Pfam:PF05493Pfam:Q9FLN5PhylomeDB:Q9FLN5PRO:PR:Q9FLN5
Proteomes:UP000006548RefSeq:NP_001154781.1RefSeq:NP_568823.1STRING:3702.AT5G55290.1
TAIR:AT5G55290TMHMM:TMhelixUniGene:At.20840UniProt:Q9FLN5
Coordinates (TAIR10) chr5:-:22423037..22424086
Molecular Weight (calculated) 7726.00 Da
IEP (calculated) 7.08
GRAVY (calculated) 1.37
Length 70 amino acids
Sequence (TAIR10)
(BLAST)
1: MGFLITTLIF VVVGIIASLC VRICCNRGPS TNLLHLTLVI TATVCCWMMW AIVYIAQMNP LIVPILSETE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)