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AT5G55280.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:24872594 (2014): plastid plastid stroma
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:23390424 (2013): plastid plastid envelope
  • PMID:21531424 (2011): plastid
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:18633119 (2008): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid stroma
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : homolog of bacterial cytokinesis Z-ring protein FTSZ 1-1
Curator
Summary (TAIR10)
Encodes one of two FtsZ proteins, tubulin-like proteins, in Arabidopsis. It is involved in chloroplast division.
Computational
Description (TAIR10)
homolog of bacterial cytokinesis Z-ring protein FTSZ 1-1 (FTSZ1-1); FUNCTIONS IN: protein binding, structural molecule activity; INVOLVED IN: chloroplast fission, plastid fission; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cell division protein FtsZ, N-terminal (InterPro:IPR000158), Tubulin, conserved site (InterPro:IPR017975), Cell division protein FtsZ, conserved site (InterPro:IPR020805), Tubulin/FtsZ, GTPase domain (InterPro:IPR003008), Tubulin/FtsZ, N-terminal (InterPro:IPR019746), Tubulin/FtsZ, C-terminal (InterPro:IPR008280), Tubulin/FtsZ, 2-layer sandwich domain (InterPro:IPR018316); BEST Arabidopsis thaliana protein match is: Tubulin/FtsZ family protein (TAIR:AT3G52750.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:20865eggNOG:COG0206eggNOG:ENOG410IEJ4EMBL:AB010071EMBL:AY034992EMBL:AY113896EMBL:CP002688
EMBL:U39877EnsemblPlants:AT5G55280EnsemblPlants:AT5G55280.1entrez:835621Gene3D:3.30.1330.20Gene3D:3.40.50.1440GeneID:835621
Genevisible:Q42545GO:GO:0003924GO:GO:0005525GO:GO:0005874GO:GO:0007017GO:GO:0007049GO:GO:0009507
GO:GO:0009535GO:GO:0009570GO:GO:0009637GO:GO:0009658GO:GO:0009902GO:GO:0010020GO:GO:0042802
GO:GO:0043572GO:GO:0043621Gramene:AT5G55280.1HAMAP:MF_00909hmmpanther:PTHR30314hmmpanther:PTHR30314:SF12HOGENOM:HOG000049094
InParanoid:Q42545IntAct:Q42545InterPro:IPR000158InterPro:IPR003008InterPro:IPR008280InterPro:IPR017975InterPro:IPR018316
InterPro:IPR020805InterPro:IPR024757KEGG:ath:AT5G55280KO:K03531MINT:MINT-4507116OMA:GMAMMGIPaxDb:Q42545
Pfam:PF00091Pfam:PF12327Pfam:Q42545PhylomeDB:Q42545PRIDE:Q42545PRINTS:PR00423PRO:PR:Q42545
PROSITE:PS01134PROSITE:PS01135ProteinModelPortal:Q42545Proteomes:UP000006548RefSeq:NP_200339.1scanprosite:PS00227scanprosite:PS01134
scanprosite:PS01135SMART:SM00864SMART:SM00865SMR:Q42545STRING:3702.AT5G55280.1SUPFAM:SSF52490SUPFAM:SSF55307
TAIR:AT5G55280tair10-symbols:ATFTSZ1-1tair10-symbols:CPFTSZtair10-symbols:FTSZ1-1TIGRfam:TIGR00065TIGRFAMs:TIGR00065UniGene:At.1538
UniProt:Q42545
Coordinates (TAIR10) chr5:-:22420740..22422527
Molecular Weight (calculated) 45567.30 Da
IEP (calculated) 7.50
GRAVY (calculated) -0.04
Length 433 amino acids
Sequence (TAIR10)
(BLAST)
001: MAIIPLAQLN ELTISSSSSS FLTKSISSHS LHSSCICASS RISQFRGGFS KRRSDSTRSK SMRLRCSFSP MESARIKVIG VGGGGNNAVN RMISSGLQSV
101: DFYAINTDSQ ALLQSSAENP LQIGELLTRG LGTGGNPLLG EQAAEESKDA IANALKGSDL VFITAGMGGG TGSGAAPVVA QISKDAGYLT VGVVTYPFSF
201: EGRKRSLQAL EAIEKLQKNV DTLIVIPNDR LLDIADEQTP LQDAFLLADD VLRQGVQGIS DIITIPGLVN VDFADVKAVM KDSGTAMLGV GVSSSKNRAE
301: EAAEQATLAP LIGSSIQSAT GVVYNITGGK DITLQEVNRV SQVVTSLADP SANIIFGAVV DDRYTGEIHV TIIATGFSQS FQKTLLTDPR AAKLLDKMGS
401: SGQQENKGMS LPHQKQSPST ISTKSSSPRR LFF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)