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AT5G55230.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:21551389 (2011): cytoskeleton
  • PMID:18667529 (2008): cytoskeleton microtubules
  • PMID:18318686 (2008): cytoskeleton microtubules
  • PMID:17674780 (2007): cytoskeleton microtubules
  • PMID:16098102 (2005): cytoskeleton
  • PMID:16098102 (2005): cytosol cell plate
  • PMID:15557096 (2004): cytoskeleton microtubules
  • PMID:15469496 (2004): cytoskeleton
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : microtubule-associated proteins 65-1
Curator
Summary (TAIR10)
Binds and bundles microtubules. Plays a role in stabilizing anti-parallel microtubules in the central spindle at anaphase to early cytokinesis but is not essential at the midline of the phragmoplast at later stages. The timing with which the MAP65-1 was targeted to the spindle appears to be regulated by a phosphorylation sensitive switch. Enhances microtubule polymerization, promotes nucleation and stabilizes microtubules against cold treatment and dilution.
Computational
Description (TAIR10)
microtubule-associated proteins 65-1 (MAP65-1); FUNCTIONS IN: microtubule binding; INVOLVED IN: in 6 processes; LOCATED IN: in 7 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Microtubule-associated protein, MAP65/ASE1-type (InterPro:IPR007145); BEST Arabidopsis thaliana protein match is: microtubule-associated protein 65-2 (TAIR:AT4G26760.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410YZBKeggNOG:KOG4302EMBL:AB010071EMBL:AK227916EMBL:BT004641EMBL:CP002688EnsemblPlants:AT5G55230
EnsemblPlants:AT5G55230.1entrez:835616ExpressionAtlas:Q9FLP0GeneID:835616Genevisible:Q9FLP0GO:GO:0000910GO:GO:0005634
GO:GO:0005819GO:GO:0005874GO:GO:0005938GO:GO:0007067GO:GO:0009524GO:GO:0043622GO:GO:0046983
hmmpanther:PTHR19321hmmpanther:PTHR19321:SF11HOGENOM:HOG000238749InParanoid:Q9FLP0InterPro:IPR007145iPTMnet:Q9FLP0ncoils:Coil
PANTHER:PTHR19321PaxDb:Q9FLP0Pfam:PF03999Pfam:Q9FLP0PhylomeDB:Q9FLP0PRIDE:Q9FLP0PRO:PR:Q9FLP0
ProteinModelPortal:Q9FLP0Proteomes:UP000006548RefSeq:NP_200334.1SMR:Q9FLP0STRING:3702.AT5G55230.2TAIR:AT5G55230tair10-symbols:ATMAP65-1
tair10-symbols:MAP65-1UniGene:At.7440UniProt:Q9FLP0
Coordinates (TAIR10) chr5:+:22402716..22405182
Molecular Weight (calculated) 65788.30 Da
IEP (calculated) 4.69
GRAVY (calculated) -0.64
Length 587 amino acids
Sequence (TAIR10)
(BLAST)
001: MAVTDTESPH LGEITCGTLL EKLQEIWDEV GESDDERDKL LLQIEQECLD VYKRKVEQAA KSRAELLQTL SDANAELSSL TMSLGDKSLV GIPDKSSGTI
101: KEQLAAIAPA LEQLWQQKEE RVREFSDVQS QIQKICGDIA GGLSNEVPIV DESDLSLKKL DDFQSQLQEL QKEKSDRLRK VLEFVSTVHD LCAVLGLDFL
201: STVTEVHPSL DEDTSVQSKS ISNETLSRLA KTVLTLKDDK KQRLQKLQEL ATQLIDLWNL MDTPDEEREL FDHVTCNISS SVDEVTVPGA LARDLIEQAE
301: VEVDRLDQLK ASRMKEIAFK KQSELEEIYA RAHVEVNPES ARERIMSLID SGNVEPTELL ADMDSQISKA KEEAFSRKDI LDRVEKWMSA CEEESWLEDY
401: NRDQNRYSAS RGAHLNLKRA EKARILVSKI PAMVDTLVAK TRAWEEEHSM SFAYDGVPLL AMLDEYGMLR QEREEEKRRL REQKKVQEQP HVEQESAFST
501: RPSPARPVSA KKTVGPRANN GGANGTHNRR LSLNANQNGS RSTAKEAGRR ETLNRPAAPT NYVAISKEEA ASSPVSGAAD HQVPASP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)