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AT5G55040.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : DNA-binding bromodomain-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
DNA-binding bromodomain-containing protein; FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bromodomain, conserved site (InterPro:IPR018359), Bromodomain (InterPro:IPR001487); BEST Arabidopsis thaliana protein match is: DNA-binding bromodomain-containing protein (TAIR:AT1G20670.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5076eggNOG:ENOG410IUKVEMBL:AY074282EMBL:AY096621EMBL:CP002688EnsemblPlants:AT5G55040EnsemblPlants:AT5G55040.1
EnsemblPlants:AT5G55040.2entrez:835595Gene3D:1.20.920.10GeneID:835595GO:GO:0003677Gramene:AT5G55040.1Gramene:AT5G55040.2
hmmpanther:PTHR22881hmmpanther:PTHR22881:SF11HOGENOM:HOG000150641InterPro:IPR001487InterPro:IPR018359KEGG:ath:AT5G55040KO:K11723
ncoils:CoilOMA:ARTIQEMPfam:PF00439Pfscan:PS50014PhylomeDB:Q8VY17PRINTS:PR00503PROSITE:PS00633
PROSITE:PS50014Proteomes:UP000006548RefSeq:NP_001119438.1RefSeq:NP_200315.2scanprosite:PS00633SMART:SM00297SMR:Q8VY17
STRING:3702.AT5G55040.1SUPFAM:SSF47370TAIR:AT5G55040UniGene:At.48079UniProt:Q8VY17
Coordinates (TAIR10) chr5:-:22327727..22331703
Molecular Weight (calculated) 103420.00 Da
IEP (calculated) 6.00
GRAVY (calculated) -1.07
Length 916 amino acids
Sequence (TAIR10)
(BLAST)
001: MSQIARRRRK GRPSKADLAA RRSSSSPRES GYELRRGQRQ RNVRYNFDFD DYFDEEEEDE VEEEKKRQKK LKQVLKLNQS RARADPPVKS RARVRHASDY
101: EEEDEEDDEA EEEEEEVSEK RQVKKRKLNR QDEEEEEEEE KDYDVEEEEE EEEGHADSEE EDDKERKRRS ASGNQCDHSS ETTPILDKKS LELILDKLQK
201: KDIYGVYAEP VDPEELPDYH DMIEHPMDFS TVRKKLANGS YSTLEELESD VLLICSNAMQ YNSSDTVYYK QARTIQEMGK RKFEKARLKI KRAEKELKTD
301: EKVKPDSSVK KQVRQPFSRN GLEAVGSDFS SGANLASGGA SQNEPVSTQI GGHEKHSYTD VLFEGNTSLV DSLEKAEDLS SGKGLFGKCG RKLSVVEEDR
401: RATYEDSDQQ GDRSESIFTT FESEIKQFVA VGLHAEHAYG RSLARFAATL GPVAWKIASQ RIEQALPADF KFGRGWVGEY EPLPTPVLLF ETCTPKEPPK
501: KASVFSKRKS NAATKTNETL FKTPLPAKEQ QGSRPVRDGN HAFPFPASIG ALSEGSPSFV ATQVGNLKSM SQHEYRNPSQ LDFVKPQNRI PQQVELNLPP
601: PAEQTNSGSG CVLENQSFGK SDTVASYRSS SDMMRNMSST DSEHYKHQMT TNGIFPGGLR NGKVSPGVNN RMFDLSTDFA NQMSRTATSS QQPMRQQSQS
701: HEEQAQIMRN FNERARTQHN STYNHPKADA PPKISSPQSA RSEDSGNASV AAARAWMSIG AGGNNKQTFE NASNPKSSQI SAESLYNPSR EHFHQQAFKP
801: RDAEETQFHP QRNGFPFQTF VHQPVHGMMN GGYQPFQNNR PIVFPQMAAP TSDFSRFHVQ SQWRGGITPQ VQLKQRQENF NLPPDLNIGV HSPDSPAKQS
901: SGVRVDSQQP DLALQL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)