AT5G55000.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : potassium channel tetramerisation domain-containing protein / pentapeptide repeat-containing protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
FH protein interacting protein FIP2 | ||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
FIP2; FUNCTIONS IN: voltage-gated potassium channel activity; INVOLVED IN: potassium ion transport; LOCATED IN: voltage-gated potassium channel complex, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentapeptide repeat (InterPro:IPR001646), BTB/POZ fold (InterPro:IPR011333), Potassium channel, voltage dependent, Kv, tetramerisation (InterPro:IPR003131), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G44920.2); Has 27525 Blast hits to 9536 proteins in 1229 species: Archae - 302; Bacteria - 20004; Metazoa - 1613; Fungi - 16; Plants - 337; Viruses - 108; Other Eukaryotes - 5145 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:22318644..22321435 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 32103.50 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.90 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.21 | ||||||||||||||||||||||||||||||||||||
| Length | 290 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: METSSNLSSM VRLNIGGKKF CTTIDTLTIR EPDSMLAAMF SGRHAMCQES KKGYVFIDRD GKHFRHILNW LRDGVIPSLS DPDCSELLRE ADYYQLLGLK 101: DGIKDSRKEV GEVEAELTRI DIIKCIQTER VRFRGVNLSG IDLSKLDLSL VDFSYACLRN VFFSRTNLQC AKFRNADAEG SIFHNAILRE CEFTSANLRG 201: ALLAGTNLQS ANLQDACLVG CSFCGADLRT AHLQNADLTN ANLEGANLEG ANLKGAKLSN ANFKGANLQR AYLRHVNLRE AVSPKPILGY |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)