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AT5G54980.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.911
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Uncharacterised protein family (UPF0497)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Uncharacterised protein family (UPF0497); CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0497, trans-membrane plant (InterPro:IPR006702), Uncharacterised protein family UPF0497, trans-membrane plant subgroup (InterPro:IPR006459); BEST Arabidopsis thaliana protein match is: Uncharacterised protein family (UPF0497) (TAIR:AT1G17200.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:20833eggNOG:ENOG410IX2YeggNOG:ENOG410YKBZEMBL:AB005232EMBL:BT002961EMBL:BT004438EMBL:CP002688
EnsemblPlants:AT5G54980EnsemblPlants:AT5G54980.1entrez:835589GeneID:835589Genevisible:Q9FFT2GO:GO:0005829GO:GO:0005886
GO:GO:0016021GO:GO:0016226GO:GO:0051536Gramene:AT5G54980.1hmmpanther:PTHR11615hmmpanther:PTHR11615:SF143HOGENOM:HOG000238912
InParanoid:Q9FFT2IntAct:Q9FFT2InterPro:IPR006459InterPro:IPR006702KEGG:ath:AT5G54980OMA:LAYNGDQPaxDb:Q9FFT2
Pfam:PF04535Pfam:Q9FFT2PhylomeDB:Q9FFT2PRIDE:Q9FFT2PRO:PR:Q9FFT2Proteomes:UP000006548RefSeq:NP_200309.1
STRING:3702.AT5G54980.1TAIR:AT5G54980TIGRfam:TIGR01569TIGRFAMs:TIGR01569TMHMM:TMhelixUniGene:At.29468UniProt:Q9FFT2
Coordinates (TAIR10) chr5:+:22315799..22316560
Molecular Weight (calculated) 21635.90 Da
IEP (calculated) 5.62
GRAVY (calculated) 0.18
Length 194 amino acids
Sequence (TAIR10)
(BLAST)
001: MRDNNNNNTR EEERSSSSKQ QQPQAPMSLK IIDSCLRLSV VPLSVATIWL TVTNHESNPD YGNLEYNSIM GLKYMVGVSA ISAIYALLST VSSWVTCLVS
101: KAWLFFIPDQ VLAYVMTTSV AGATEIVYLL NKGDKIVTWS EMCSSYPHYC SKLTIALGLH VFVLFFFLFL SVISAYRAFS PFDPPCDSQT NNDA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)