suba logo
AT5G54960.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 0.931
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31520498 (2020): mitochondrion
  • PMID:31186290 (2019): cytosol None
  • PMID:30961429 (2019): nucleus
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27122571 (2016): mitochondrion
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:21433285 (2011): plasma membrane
  • PMID:21166475 (2011): cytosol
  • PMID:19334764 (2009): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : pyruvate decarboxylase-2
Curator
Summary (TAIR10)
pyruvate decarboxylase-2
Computational
Description (TAIR10)
pyruvate decarboxylase-2 (PDC2); FUNCTIONS IN: pyruvate decarboxylase activity, magnesium ion binding, carboxy-lyase activity, thiamin pyrophosphate binding, catalytic activity; INVOLVED IN: response to hypoxia; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thiamine pyrophosphate enzyme, central domain (InterPro:IPR012000), Pyruvate decarboxylase/indolepyruvate decarboxylase (InterPro:IPR012110), Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain (InterPro:IPR012001), Thiamine pyrophosphate enzyme, C-terminal TPP-binding (InterPro:IPR011766); BEST Arabidopsis thaliana protein match is: Thiamine pyrophosphate dependent pyruvate decarboxylase family protein (TAIR:AT4G33070.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G54960-MONOMERBioGrid:20831BRENDA:4.1.1.1EC:4.1.1.1
eggNOG:COG3961eggNOG:KOG1184EMBL:AB005232EMBL:BX830776
EMBL:CP002688EMBL:U71122EnsemblPlants:AT5G54960EnsemblPlants:AT5G54960.1
entrez:835587Gene3D:3.40.50.1220Gene3D:3.40.50.970GeneID:835587
Genevisible:Q9FFT4GO:GO:0000287GO:GO:0001666GO:GO:0004737
GO:GO:0005829GO:GO:0030976Gramene:AT5G54960.1gramene_pathway:4.1.1.1
gramene_pathway:PWY-3801gramene_pathway:PWY-5486gramene_pathway:PWY-6333gramene_plant_reactome:1119486
gramene_plant_reactome:6876335hmmpanther:PTHR18968hmmpanther:PTHR18968:SF137HOGENOM:HOG000061335
InParanoid:Q9FFT4InterPro:IPR011766InterPro:IPR012000InterPro:IPR012001
InterPro:IPR012110InterPro:IPR029035InterPro:IPR029061KEGG:ath:AT5G54960
KO:K01568ncoils:CoilOMA:YIEVANDPaxDb:Q9FFT4
Pfam:PF00205Pfam:PF02775Pfam:PF02776Pfam:Q9FFT4
PhylomeDB:Q9FFT4PIRSF:PIRSF036565PRIDE:Q9FFT4PRO:PR:Q9FFT4
ProMEX:Q9FFT4ProteinModelPortal:Q9FFT4Proteomes:UP000006548RefSeq:NP_200307.1
SMR:Q9FFT4STRING:3702.AT5G54960.1SUPFAM:SSF52467SUPFAM:SSF52518
TAIR:AT5G54960tair10-symbols:PDC2UniGene:At.47515UniGene:At.71484
UniProt:Q9FFT4
Coordinates (TAIR10) chr5:-:22310858..22312681
Molecular Weight (calculated) 65821.60 Da
IEP (calculated) 5.84
GRAVY (calculated) -0.04
Length 607 amino acids
Sequence (TAIR10)
(BLAST)
001: MDTKIGSIDA CNPTNHDIGG PPNGGVSTVQ NTSPLHSTTV SPCDATLGRY LARRLVEIGV TDVFSVPGDF NLTLLDHLIA EPNLKLIGCC NELNAGYAAD
101: GYARSRGVGA CVVTFTVGGL SVLNAIAGAY SENLPLICIV GGPNSNDYGT NRILHHTIGL PDFTQELRCF QAVTCFQAVI NNLEEAHELI DTAISTALKE
201: SKPVYISISC NLPAIPLPTF SRHPVPFMLP MKVSNQIGLD AAVEAAAEFL NKAVKPVLVG GPKMRVAKAA DAFVELADAS GYGLAVMPSA KGQVPEHHKH
301: FIGTYWGAVS TAFCAEIVES ADAYLFAGPI FNDYSSVGYS LLLKKEKAII VQPDRVTIGN GPAFGCVLMK DFLSELAKRI KHNNTSYENY HRIYVPEGKP
401: LRDNPNESLR VNVLFQHIQN MLSSESAVLA ETGDSWFNCQ KLKLPEGCGY EFQMQYGSIG WSVGATLGYA QAMPNRRVIA CIGDGSFQVT AQDVSTMIRC
501: GQKTIIFLIN NGGYTIEVEI HDGPYNVIKN WNYTAFVEAI HNGEGKCWTA KVRCEEELVK AINTATNEEK ESFCFIEVIV HKDDTSKELL EWGSRVSAAN
601: SRPPNPQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)