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AT5G54940.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Translation initiation factor SUI1 family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Translation initiation factor SUI1 family protein; FUNCTIONS IN: translation initiation factor activity; INVOLVED IN: translational initiation, translation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Translation initiation factor SUI1 (InterPro:IPR001950), Eukaryotic translation initiation factor SUI1 (InterPro:IPR005874); BEST Arabidopsis thaliana protein match is: Translation initiation factor SUI1 family protein (TAIR:AT4G27130.1); Has 874 Blast hits to 871 proteins in 283 species: Archae - 36; Bacteria - 5; Metazoa - 362; Fungi - 162; Plants - 195; Viruses - 5; Other Eukaryotes - 109 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0023eggNOG:KOG1770EMBL:AB005232EMBL:AF385736EMBL:AY087132EMBL:AY133677EMBL:CP002688
EnsemblPlants:AT5G54940EnsemblPlants:AT5G54940.1EnsemblPlants:AT5G54940.2entrez:835585Gene3D:3.30.780.10GeneID:835585GO:GO:0003743
Gramene:AT5G54940.1Gramene:AT5G54940.2hmmpanther:PTHR10388hmmpanther:PTHR10388:SF16HOGENOM:HOG000279813IntAct:Q9FFT6InterPro:IPR001950
InterPro:IPR005874KEGG:ath:AT5G54940KO:K03113OMA:NIHIRIQPfam:PF01253Pfscan:PS50296PhylomeDB:Q9FFT6
PIRSF:PIRSF004499PROSITE:PS50296Proteomes:UP000006548RefSeq:NP_568818.1RefSeq:NP_851192.1SMR:Q9FFT6STRING:3702.AT5G54940.1
SUPFAM:SSF55159TAIR:AT5G54940TIGRfam:TIGR01160TIGRFAMs:TIGR01160UniGene:At.23443UniProt:Q9FFT6
Coordinates (TAIR10) chr5:-:22308420..22308758
Molecular Weight (calculated) 12718.40 Da
IEP (calculated) 9.73
GRAVY (calculated) -0.68
Length 112 amino acids
Sequence (TAIR10)
(BLAST)
001: MVELDIQIPS AYDPFAEAKD SDAPGAKENI HIRIQQRNGK KSLTTVQGLK KEYSYERILK DLKKDFCCNG NVVQDKELGK IIQLQGDQRK KVSQFLVQTG
101: IAKKDQIKIH GF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)