AT5G54860.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:endoplasmic reticulum 0.999 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Major facilitator superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Major facilitator superfamily protein; FUNCTIONS IN: transporter activity; INVOLVED IN: transport; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Major facilitator superfamily, general substrate transporter (InterPro:IPR016196), Biopterin transport-related protein BT1 (InterPro:IPR004324); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT1G64890.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:22284721..22287025 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 53886.30 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.49 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.43 | ||||||||||||||||||||||||||||||||||||||||
| Length | 491 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MIHWLKQLRS AFGVAFLWLV CLIYFTQGFR SFVWTAVSYQ LKDRLQLSPS ASQFVFSVAF FPWSIKPLYG IISDCIPIGG KKRTPYLVIS TVLSLVPWLV 101: LGLDSTSRSS SLYLMIFLTV QNLGSAMADV VIDAMIAEAV RLEKASFAGD LQSVSWFAMA VGGVCGSLLG GYALSNLKIE TIFLLFTVLP ALQLLSCALV 201: EESPANNEPL PELLDSNEFE EKSLTSNDNY PDTSKSNTRR RKGQKKGKKG DSNGKSETQK KQSKSLASQW FQSLKAATFG LGRAFKQPII LRPMAWFFIA 301: HITVPNLSTV MFYYQTEVLQ LDAAFLGTAR VVGWLGLMFG TFIYNRYLQD MTLRKSLLFA HIGLSVTILL DMVLVSRANV GYGVSDKTMV LFGSALGDAI 401: NQLKFMPFLI LSGRLCPPGI EGTLFALFMS INNLGNTVGS FMGAGLASLL GISSGSFDNM FMGLAIQVFC TYIPVLFLFL IPKEATGVSA S |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)