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AT5G54780.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
mitochondrion 0.804
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ypt/Rab-GAP domain of gyp1p superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ypt/Rab-GAP domain of gyp1p superfamily protein; FUNCTIONS IN: RAB GTPase activator activity; INVOLVED IN: regulation of Rab GTPase activity; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RabGAP/TBC (InterPro:IPR000195); BEST Arabidopsis thaliana protein match is: Ypt/Rab-GAP domain of gyp1p superfamily protein (TAIR:AT4G27100.2); Has 4120 Blast hits to 4004 proteins in 231 species: Archae - 0; Bacteria - 0; Metazoa - 2315; Fungi - 731; Plants - 615; Viruses - 0; Other Eukaryotes - 459 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5210eggNOG:KOG2197EMBL:AK226930EMBL:CP002688EnsemblPlants:AT5G54780EnsemblPlants:AT5G54780.1entrez:835568
GeneID:835568GO:GO:0005739Gramene:AT5G54780.1hmmpanther:PTHR22957hmmpanther:PTHR22957:SF276InterPro:IPR000195KEGG:ath:AT5G54780
OMA:LYAWIDNPfam:PF00566Pfscan:PS50086PhylomeDB:Q0WV47PROSITE:PS50086Proteomes:UP000006548RefSeq:NP_200289.2
SMART:SM00164SMR:Q0WV47STRING:3702.AT5G54780.1SUPFAM:SSF47923TAIR:AT5G54780UniGene:At.29477UniProt:Q0WV47
Coordinates (TAIR10) chr5:-:22248696..22251692
Molecular Weight (calculated) 49409.70 Da
IEP (calculated) 8.13
GRAVY (calculated) -0.40
Length 432 amino acids
Sequence (TAIR10)
(BLAST)
001: MWGAAAEPAD SYYLIRPECT DVPNTKFKIK PGKTLSVRKW QAAFTTEGFL DIGKTLSRIQ RGGIHPSIRG EVWEFLLGCY DPKSTFEERE QIRQRRRLQY
101: ASWKEECKQM FPVIGSGGFI TAPVITNKGE PIYDPIVLQE TNLGANGSDF FKDLASRGPL DQKVIQWLLT LHQIGLDVNR TDRTLVFYEK KENLSKLWDI
201: LALYAWIDND VGYCQGMSDL CSPMIMLLED EADAFWCFER LMRRLRGNFR DTGRSVGVEA QLTHLASITQ IIDPKLHHHL EKLGGGDYLF AIRMIMVQFR
301: REFSFCDSLY LWEMMWALEY DPEMYSLYEE PQFEGERIEG SSKGKPKSIN QCGKYERENM KNGGKSAEGP LPISVFLVAS VLKDKSSKLM TEARGLDDVV
401: KILNDITGNL DAKKACTGAM KLHKKYLKKA KK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)