AT5G54730.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.525 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : homolog of yeast autophagy 18 (ATG18) F | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
homolog of yeast autophagy 18 (ATG18) F (G18F); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to starvation; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), Breast carcinoma amplified sequence 3 (InterPro:IPR022175), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: homolog of yeast autophagy 18 (ATG18) G (TAIR:AT1G03380.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:22233977..22236804 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 82784.30 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.60 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.29 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 763 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKKNGDGSSP KSPDGVVSRS ARSSFRALSN CLKVISSGAS TVARSAVSAA SSAVESHHDQ VLWAGFDNLQ KEDGDTRRVL LLAFKSGFQV WDVEDTENVH 101: VIVSAHDGQA FFMQMLLNPI NSGVLDDRFY KSRPLLAVCG DYSSKKISSD NPGSETVATP TNVYVYSLKS QSYVHTLKFR ATIYSVRCCS RIVAVLQAAQ 201: IDCFDAATLE MDYRIVTNSI VCGSLGVGYG PLAVGPRWIA YSGSRIATSS SAIFTSEIVS LSTSSPSVAQ FARDSSKQLA SGIANLGDKG YRSLTKYCSE 301: VLPNPYIPGL KGIGVGNEKV ADAESIGMVI VKDITNKSVI TQFKAHKSPI SALCFDQSGL LLVTASIQGH NINVFRIMPT ISTSRAVKTT TFAHLFRLQR 401: GFTNAVIQDI CFSKDSNLIV VGSSRGTSHL FEINPEKEGD APVPMSAISR IRSGNSSGWI GTVSGAASAA AGMVAGSVPG TVTSTFCYCD EKSNNNYYGS 501: VADMCSKTNL LVFAPSGCMT QYALREHQVG VGHETAAMTG FDSESGLETE GKLAVDPIRR WSMIQNQSRR ETHDPHSDIY GGGTSVDSKS KVFPEVVRKQ 601: SVEEAWKVSK KGTTRVVDKR HLYIYEAEQQ QTHLPTQLPL WARRKFRFQE LVLNRGEEIS GGGGREMEIE GIQTRTIEAR TRDLVPVWGY LQSPRSQQVI 701: NESIQSPSTT TQDDKVATLE GHGTETDLGA VHSEEQTQSE PVDKEGIAEE KNHSEDEDEE QVD |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)