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AT5G54540.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 0.589
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Uncharacterised conserved protein (UCP012943)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Uncharacterised conserved protein (UCP012943); CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein UCP012943 (InterPro:IPR016606); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J1JJeggNOG:ENOG410YZ19EMBL:AB016879EMBL:AY058185EMBL:AY098976EMBL:CP002688EnsemblPlants:AT5G54540
EnsemblPlants:AT5G54540.1entrez:835542GeneID:835542Gramene:AT5G54540.1hmmpanther:PTHR33625hmmpanther:PTHR33625:SF4HOGENOM:HOG000239827
InterPro:IPR016606KEGG:ath:AT5G54540OMA:MEFYKNHPhylomeDB:Q9FIV0PIRSF:PIRSF012943Proteomes:UP000006548RefSeq:NP_200265.1
TAIR:AT5G54540UniGene:At.6913UniProt:Q9FIV0
Coordinates (TAIR10) chr5:+:22156604..22157857
Molecular Weight (calculated) 31867.80 Da
IEP (calculated) 4.48
GRAVY (calculated) -0.17
Length 297 amino acids
Sequence (TAIR10)
(BLAST)
001: MGGGRAMATA AKVAGIGVGK GGFKGFGFPP ATEQFRVKTA AAAASSKPVS ASITSAVHPS VEEDGMIMQR PVWDDWEFAE EEPIPRVVFS KPPSLEEAKE
101: ATEDLKEAIN LVYMSSPKSS AAMEGSNDGG SVSKMLSGFQ SSENRAVESA VPQVALQAFA FLSENTAAQT VVASIASDPK VWDAVMENKD LMKFLQTNKT
201: AVSSQVESDN DDQSERSSTT ECEVVETKPM ELLEILQDMK LKAVRLMENV SSYFGDLFGL GSVTEDGKDK KQTLFNDPRS LFGLAVVVIF MVVLKRA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)