suba logo
AT5G54480.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF630 and DUF632)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF630 and DUF632); INVOLVED IN: N-terminal protein myristoylation; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF630 (InterPro:IPR006868), Protein of unknown function DUF632 (InterPro:IPR006867); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF630 and DUF632) (TAIR:AT1G21740.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JW89eggNOG:ENOG4110565EMBL:AB026634EMBL:CP002688EnsemblPlants:AT5G54480EnsemblPlants:AT5G54480.1entrez:835536
GeneID:835536Gramene:AT5G54480.1hmmpanther:PTHR21450hmmpanther:PTHR21450:SF14HOGENOM:HOG000238675InterPro:IPR006867InterPro:IPR006868
KEGG:ath:AT5G54480ncoils:CoilOMA:FLAKCHHPfam:PF04782Pfam:PF04783PhylomeDB:Q9LSQ7Proteomes:UP000006548
RefSeq:NP_200259.1SUPFAM:SSF103657TAIR:AT5G54480UniGene:At.55548UniProt:Q9LSQ7
Coordinates (TAIR10) chr5:+:22118004..22120166
Molecular Weight (calculated) 81857.00 Da
IEP (calculated) 4.86
GRAVY (calculated) -0.66
Length 720 amino acids
Sequence (TAIR10)
(BLAST)
001: MGIVASKGDS NTPLLNLCKE RKELIKAARD ARYHLARSHL LYFKSLLDFS KALKQFLHKD LVVIPYSDDD SSSSDIICSG SDSDSDTDSD SDSDSDCIVC
101: DQPQTAPLSN NDDQSQRKPV VGDGTCGASN NGQEGMEKSR EGLGFEGTQF VSDPSEDEMK SSQHPYDILG FYKSVYNMQQ CEIIELDHRD DEVESDGFRE
201: IREREGIPDL EPESDYNSLI RKNKKKNKKK KKKKNVRESS SVASEIDKRD VEANTCNGQV ADETDNSNEA CAQETENTPE IVTEEVTRSD EEVEVVARSD
301: EEVSDEAYES SSSCFSESSG SGLTDLRKVV ERINSICGKA AGNSEVSELL EVSRVVYHQP LGSQFKGFAS RVIGSSGTTT RDLVLKRRFR LDDLAVSLSM
401: TLEKLYMWEK KLHAEVTAEE KLRVAYEKAY KILNNLDQNG AESSELYEAE TLVKLHLSKV NVSVRAVESI SMRIHKIRDE ELSFQVIEII NGFKTMWRFL
501: AKCHHKQFRV IARSKSCVHI VENGSSSRKA TQQVEKQIRR YRESLKGYID AHRGFVKLLN EWLNRIIMED DETETEAPEI FRVCSEWLRE IENVDTIKVL
601: SVVEEMRLRF QGLGFKQVEE EKQRMRTERL SKELEKKTKE LEEIRGTRGS SPTSNMVEPE LLFLRESVTQ ETEKHERLIR ELNDAVSMSL QECMVPVFEA
701: LGDFCFANFK AYQNIVIVTT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)