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AT5G54470.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : B-box type zinc finger family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
B-box type zinc finger family protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding; INVOLVED IN: response to cold, regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Zinc finger, B-box (InterPro:IPR000315); BEST Arabidopsis thaliana protein match is: B-box type zinc finger family protein (TAIR:AT4G27310.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J0D3eggNOG:ENOG410YSB4EMBL:AK221519EMBL:BT012358EMBL:CP002688EnsemblPlants:AT5G54470EnsemblPlants:AT5G54470.1
entrez:835535GeneID:835535GO:GO:0003700GO:GO:0005622GO:GO:0006355GO:GO:0008270GO:GO:0009409
GO:GO:0009555Gramene:AT5G54470.1hmmpanther:PTHR31717hmmpanther:PTHR31717:SF7HOGENOM:HOG000115162InterPro:IPR000315KEGG:ath:AT5G54470
OMA:CELCCGVProteomes:UP000006548RefSeq:NP_200258.2SMART:SM00336STRING:3702.AT5G54470.1TAIR:AT5G54470UniGene:At.43303
UniProt:Q6NLH4
Coordinates (TAIR10) chr5:-:22114584..22115315
Molecular Weight (calculated) 23478.20 Da
IEP (calculated) 4.53
GRAVY (calculated) -0.63
Length 215 amino acids
Sequence (TAIR10)
(BLAST)
001: MGKKKCELCC GVARMYCESD QASLCWDCDG KVHGANFLVA KHMRCLLCSA CQSHTPWKAS GLNLGPTVSI CESCLARKKN NNSSLAGRDQ NLNQEEEIIG
101: CNDGAESYDE ESDEDEEEEE VENQVVPAAV EQELPVVSSS SSVSSGEGDQ VVKRTRLDLD LNLSDEENQS RPLKRLSRDE GLSRSTVVMN SSIVKLHGGR
201: RKAEGCDTSS SSSFY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)