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AT5G54350.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.997
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: C2H2-like zinc finger protein (TAIR:AT5G54360.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
EMBL:CP002688EnsemblPlants:AT5G54350EnsemblPlants:AT5G54350.1entrez:835523GeneID:835523Gramene:AT5G54350.1InParanoid:F4K0B5
KEGG:ath:AT5G54350PaxDb:F4K0B5PRIDE:F4K0B5ProteinModelPortal:F4K0B5Proteomes:UP000006548RefSeq:NP_200246.2STRING:3702.AT5G54350.1
TAIR:AT5G54350UniGene:At.55546UniProt:F4K0B5
Coordinates (TAIR10) chr5:+:22070135..22070920
Molecular Weight (calculated) 28731.60 Da
IEP (calculated) 8.43
GRAVY (calculated) -0.58
Length 261 amino acids
Sequence (TAIR10)
(BLAST)
001: MENQSVSSSS SSTTPKKPDQ KLKSAVVTVE EKETMNNPEQ RPPQEVVFEN TIPDPELPVF TLEVVRTERD NELKYPPKDK NLDSVLSGGT SLPPFQSFPV
101: PSFGLFGPAY GGSSSTNDIN LDLTLGPSSW SNTNPSSWSN TDPSFYRKLF TPVLPCVPRN NFVAGNPVGS NTRYIPPNGN NNVCHDFFFL QGNSSASTHS
201: KSLFSMGKNQ AMVRHFALSY PTTYYCYDLF SLQGNGSGNW PLKSHLKVGK KVRVPPLAPP Y
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)