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AT5G54200.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.984
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Transducin/WD40 repeat-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT3G15470.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XQPJeggNOG:KOG0283EMBL:AB013387EMBL:CP002688EnsemblPlants:AT5G54200EnsemblPlants:AT5G54200.1entrez:835508
Gene3D:2.130.10.10GeneID:835508Gramene:AT5G54200.1hmmpanther:PTHR14221hmmpanther:PTHR14221:SF0HOGENOM:HOG000239143InterPro:IPR001680
InterPro:IPR015943InterPro:IPR017986InterPro:IPR019775InterPro:IPR020472KEGG:ath:AT5G54200OMA:RDMSFHDPfam:PF00400
Pfscan:PS50082Pfscan:PS50294PhylomeDB:Q9FK21PRINTS:PR00320PROSITE:PS00678PROSITE:PS50082PROSITE:PS50294
Proteomes:UP000006548RefSeq:NP_200231.1scanprosite:PS00678SMART:SM00320SMR:Q9FK21STRING:3702.AT5G54200.1SUPFAM:SSF50978
TAIR:AT5G54200UniGene:At.27971UniProt:Q9FK21
Coordinates (TAIR10) chr5:-:21993565..21997076
Molecular Weight (calculated) 93027.00 Da
IEP (calculated) 7.79
GRAVY (calculated) -0.64
Length 825 amino acids
Sequence (TAIR10)
(BLAST)
001: MMKMMMMNRR RSNVVRFEAK KEDKVEEEDN NDDCFYESLD RVLSSCSCST SNSDYDSDPN VSDSIHDPTP FPVPMFTSGF ELWKSEPESV SERRIRLLRG
101: LGLSNEPDLP PASQLRSRSR RNSSHFSRSV PSDVLTSNHH GKCVLRSDVS GTDNVDREYT GSRMRNDGVD FISKEPMERS LRDIVEKENG RDVVLEEQMC
201: TIRNLDTGRE FVVNEVREDG MLERLKEVGT DRQLTLEEFE ICVGTSPIVL ELMRRQNVED VCKDSVDLDT NVSGSRVTKH RRRGSWLKSI KNVASSVTGY
301: KERRSTDDRD SPSERGGQRF SSATDDSRDM SFHDPERVKV RQYGKSCKEL TALFKSQEIQ AHKGSIWSIK FSLDGRYLAS AGEDCVIQIW KVVESERKGE
401: LLSMDKQEDG SINLFLLANG SPEPVSMSPK RRGRTSFSRK SVSLDNVLVP EAVFGLSEKP VCSFVGHLDD VLDLSWSKSQ HLLSSSMDKT VRLWDLSSKT
501: CLKVFSHSDY VTCIQFNPVD DNYFISGSLD AKVRIWSIPD HQVVDWNDLH EMVTAACYTP DGQGALVGSY KGTCCLYNTH DNKLQQRREI NLKNRKKKTH
601: HKKITGFQFV AGSSSEVLVT SADSRTRVVD GVDLVHKFKG FRNTNSQISA SLTSNGKFLV SASEDSNVYV WNYDSDSRAG RSKRVTVTNS YENFYCRDVS
701: VAAPWPGKIS NNHTNNSPEQ SSFTANNNPP TPVNDPTNNK TVTNGIISSA TNRYFFDRVS ATWPEEKLLL AAKNRARTSP RVSVDMSNIQ VNTKPSASAW
801: SMVIVTGSLR GEIRIFQNFG FPVRL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)