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AT5G54180.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : plastid transcriptionally active 15
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
plastid transcriptionally active 15 (PTAC15); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plastid chromosome, chloroplast, nucleoid; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mitochodrial transcription termination factor-related (InterPro:IPR003690); BEST Arabidopsis thaliana protein match is: Mitochondrial transcription termination factor family protein (TAIR:AT4G14605.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XT49eggNOG:KOG1267EMBL:AB013387EMBL:AY081343
EMBL:AY088205EMBL:BT000254EMBL:CP002688EnsemblPlants:AT5G54180
EnsemblPlants:AT5G54180.1entrez:835506GeneID:835506GO:GO:0003690
GO:GO:0005739GO:GO:0006355GO:GO:0009295GO:GO:0009507
GO:GO:0009508Gramene:AT5G54180.1hmmpanther:PTHR13068hmmpanther:PTHR13068:SF32
IntAct:Q9FK23InterPro:IPR003690KEGG:ath:AT5G54180MINT:MINT-8360713
OMA:SKKHPQIPfam:PF02536PhylomeDB:Q9FK23Proteomes:UP000006548
RefSeq:NP_200229.1SMART:SM00733SMR:Q9FK23STRING:3702.AT5G54180.1
TAIR:AT5G54180tair10-symbols:PTAC15UniGene:At.29509UniProt:Q9FK23
Coordinates (TAIR10) chr5:+:21988544..21990183
Molecular Weight (calculated) 56352.90 Da
IEP (calculated) 7.54
GRAVY (calculated) 0.07
Length 500 amino acids
Sequence (TAIR10)
(BLAST)
001: MVILSLVSCS FSVFSPPISL RLHLPPVTSL CSHGTFPASS TFRSQLQPLL ISCLNHREPA LTFRCSCLSS PIESGSQIES LFSLFRDIGF IEEETEMILA
101: KNPDIKSTSL DKIGARVASL QSLKINGFPL QGLIAKCPNL LTSEEFDLVI SFLVDELEGR LDPELVERLL SVVDTSILLS FNQKVRLLLL HGIPKEKISH
201: VLNKVYLNKL LYQKSVEDIE RLISFLEPFG GIGIIARRPV ILNSDLDSQL IPRVDFIRNL SGEDDFATGT VLRRLPAILS YSVEHMNGQV EFLKSFAGLT
301: SEQVFKIVHV FPNVISTSKE RKLRPRIEFL KECGFDSPGM FKFLSKAPLI LALSENNLSH KLGFLVKIGY KHRTKELAFA MGAVTRTSSD NMQRVIGLYL
401: SYGLSFEDIL AMSTKHPQVL QYNYTSLEEK LEYLIEYMGR EVEELLAFPA FLGYKLDSRI KHRYEEKLKS RGENMSLNKL LTVSAERFSK AADNIEMICL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)