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AT5G54080.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : homogentisate 1,2-dioxygenase
Curator
Summary (TAIR10)
homogentisate 1,2-dioxygenase
Computational
Description (TAIR10)
homogentisate 1,2-dioxygenase (HGO); FUNCTIONS IN: homogentisate 1,2-dioxygenase activity; INVOLVED IN: tyrosine metabolic process, oxidation reduction, L-phenylalanine catabolic process, tyrosine catabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Homogentisate 1,2-dioxygenase (InterPro:IPR005708); Has 1765 Blast hits to 1763 proteins in 704 species: Archae - 21; Bacteria - 1187; Metazoa - 139; Fungi - 155; Plants - 44; Viruses - 0; Other Eukaryotes - 219 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G54080-MONOMERBioCyc:ARA:GQT-2804-MONOMERBRENDA:1.13.11.5EC:1.13.11.5eggNOG:COG3508eggNOG:KOG1417EMBL:AB018115
EMBL:AF130845EMBL:AY088421EMBL:AY140075EMBL:BT010329EMBL:CP002688EMBL:U80668EnsemblPlants:AT5G54080
EnsemblPlants:AT5G54080.1EnsemblPlants:AT5G54080.2entrez:835494Gene3D:2.60.120.10GeneID:835494Genevisible:Q9ZRA2GO:GO:0004411
GO:GO:0005829GO:GO:0006559GO:GO:0006572GO:GO:0046872GO:GO:1902000Gramene:AT5G54080.1Gramene:AT5G54080.2
gramene_pathway:1.13.11.5gramene_pathway:TYRFUMCAT-PWYhmmpanther:PTHR11056hmmpanther:PTHR11056:SF0HOGENOM:HOG000139824InParanoid:Q9ZRA2InterPro:IPR005708
InterPro:IPR011051InterPro:IPR014710iPTMnet:Q9ZRA2KEGG:00350+1.13.11.5KEGG:00643+1.13.11.5KEGG:ath:AT5G54080KO:K00451
OMA:RGYLCENPANTHER:PTHR11056PaxDb:Q9ZRA2Pfam:PF04209Pfam:Q9ZRA2PhylomeDB:Q9ZRA2PRIDE:Q9ZRA2
PRO:PR:Q9ZRA2ProteinModelPortal:Q9ZRA2Proteomes:UP000006548Reactome:R-ATH-71182RefSeq:NP_200219.1RefSeq:NP_851187.1SMR:Q9ZRA2
STRING:3702.AT5G54080.1SUPFAM:SSF51182TAIR:AT5G54080tair10-symbols:HGOTIGRfam:TIGR01015TIGRFAMs:TIGR01015UniGene:At.23160
UniGene:At.72265UniPathway:UPA00139UniProt:Q9ZRA2
Coordinates (TAIR10) chr5:+:21945920..21948070
Molecular Weight (calculated) 51458.00 Da
IEP (calculated) 6.12
GRAVY (calculated) -0.26
Length 461 amino acids
Sequence (TAIR10)
(BLAST)
001: MEEKKKELEE LKYQSGFGNH FSSEAIAGAL PLDQNSPLLC PYGLYAEQIS GTSFTSPRKL NQRSWLYRVK PSVTHEPFKP RVPAHKKLVS EFDASNSRTN
101: PTQLRWRPED IPDSEIDFVD GLFTICGAGS SFLRHGFAIH MYVANTGMKD SAFCNADGDF LLVPQTGRLW IETECGRLLV TPGEIAVIPQ GFRFSIDLPD
201: GKSRGYVAEI YGAHFQLPDL GPIGANGLAA SRDFLAPTAW FEDGLRPEYT IVQKFGGELF TAKQDFSPFN VVAWHGNYVP YKYDLKKFCP YNTVLLDHGD
301: PSINTVLTAP TDKPGVALLD FVIFPPRWLV AEHTFRPPYY HRNCMSEFMG LIYGAYEAKA DGFLPGGASL HSCMTPHGPD TTTYEATIAR VNAMAPSKLT
401: GTMAFMFESA LIPRVCHWAL ESPFLDHDYY QCWIGLKSHF SRISLDKTNV ESTEKEPGAS E
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)