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AT5G54030.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.676
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : Cysteine/Histidine-rich C1 domain family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Cysteine/Histidine-rich C1 domain family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: intracellular signaling pathway; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Protein kinase C-like, phorbol ester/diacylglycerol binding (InterPro:IPR002219), DC1 (InterPro:IPR004146), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT5G29624.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
EMBL:AB007644EMBL:CP002688EnsemblPlants:AT5G54030EnsemblPlants:AT5G54030.1
entrez:835486GeneID:835486GO:GO:0005622GO:GO:0035556
GO:GO:0046872GO:GO:0047134Gramene:AT5G54030.1hmmpanther:PTHR32410
hmmpanther:PTHR32410:SF152HOGENOM:HOG000064693InterPro:IPR002219InterPro:IPR004146
InterPro:IPR011424KEGG:ath:AT5G54030Pfam:PF03107Pfam:PF07649
Pfscan:PS50081PhylomeDB:Q9FN24PROSITE:PS50081Proteomes:UP000006548
RefSeq:NP_200214.1SMART:SM00109SMR:Q9FN24SUPFAM:SSF57889
TAIR:AT5G54030UniGene:At.65674UniProt:Q9FN24
Coordinates (TAIR10) chr5:-:21925984..21927243
Molecular Weight (calculated) 48484.30 Da
IEP (calculated) 6.74
GRAVY (calculated) -0.24
Length 419 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSTDDFEVE TISEIMVPFH HHPLSSYASE FLTSCSLCLF STFLGEIVTR IRYQCMDCGL KLHDECINSL SLNRPFLCNH ILKVYTHIFT SSGRIYENTC
101: HFCQSKLEFL FARCTICNLN VDIECLFALP PLTISEPKHH KHSLSLLLRL VTFTCNACGV EGDRNPYVCL ECNLMVHKDC VENLPRVISI NRHDHRISHT
201: FHLGKKEGDW ECGVCRKMIN CVYGGYKCSR CPSYAVHSRC ATRKEVWDGL ELEDVPEEEE EIEDPFKVIN DKGDIIHFSH EEHVLRLDEN YVIDDANMRC
301: RCCILAINGD PCYRCVECNF ILHEACANLP RKKRHLLHNH KLTLSSTLIN KDIFHECGAC GIYTDGFIYE CRHEDCKKKI IKYDVRCSSV SEPFHHDLHQ
401: HPYTLPCKVR DDVRLVTKK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)