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AT5G53970.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Tyrosine transaminase family protein
Curator
Summary (TAIR10)
encodes tyrosine aminotransferase which is strongly induced upon aging and coronatine treatment
Computational
Description (TAIR10)
Tyrosine transaminase family protein; CONTAINS InterPro DOMAIN/s: 1-aminocyclopropane-1-carboxylate synthase (InterPro:IPR001176), Aminotransferase, class I/classII (InterPro:IPR004839), Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Tyrosine transaminase (InterPro:IPR021178), Tyrosine/nicotianamine aminotransferase (InterPro:IPR005958), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: Tyrosine transaminase family protein (TAIR:AT5G36160.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G53970-MONOMEREC:2.6.1.-eggNOG:COG0436eggNOG:KOG0259EMBL:AB007644EMBL:BT000782EMBL:BT001912
EMBL:CP002688EnsemblPlants:AT5G53970EnsemblPlants:AT5G53970.1entrez:835480Gene3D:3.40.640.10Gene3D:3.90.1150.10GeneID:835480
Genevisible:Q9FN30GO:GO:0004838GO:GO:0006520GO:GO:0010189GO:GO:0030170Gramene:AT5G53970.1gramene_pathway:2.6.1.5
gramene_pathway:2.6.1.57gramene_pathway:PWY-5079gramene_pathway:PWY-5886gramene_pathway:TYRFUMCAT-PWYgramene_plant_reactome:1119389gramene_plant_reactome:1119400gramene_plant_reactome:6875495
gramene_plant_reactome:6875770hmmpanther:PTHR11751hmmpanther:PTHR11751:SF387HOGENOM:HOG000239005InParanoid:Q9FN30InterPro:IPR004839InterPro:IPR005958
InterPro:IPR015421InterPro:IPR015422InterPro:IPR015424KEGG:ath:AT5G53970KO:K00815OMA:MGDPTLYPaxDb:Q9FN30
Pfam:PF00155Pfam:Q9FN30PhylomeDB:Q9FN30PIRSF:PIRSF000517PRIDE:Q9FN30PRO:PR:Q9FN30ProteinModelPortal:Q9FN30
Proteomes:UP000006548Reactome:R-ATH-71182RefSeq:NP_200208.1SMR:Q9FN30STRING:3702.AT5G53970.1SUPFAM:SSF53383TAIR:AT5G53970
TIGRfam:TIGR01265TIGRFAMs:TIGR01265UniGene:At.24214UniProt:Q9FN30
Coordinates (TAIR10) chr5:+:21910676..21912594
Molecular Weight (calculated) 45904.60 Da
IEP (calculated) 5.73
GRAVY (calculated) 0.05
Length 414 amino acids
Sequence (TAIR10)
(BLAST)
001: MENGATTTST ITIKGILSLL MESITTEEDE GGKRVISLGM GDPTLYSCFR TTQVSLQAVS DSLLSNKFHG YSPTVGLPQA RRAIAEYLSR DLPYKLSQDD
101: VFITSGCTQA IDVALSMLAR PRANILLPRP GFPIYELCAK FRHLEVRYVD LLPENGWEID LDAVEALADE NTVALVVINP GNPCGNVYSY QHLMKIAESA
201: KKLGFLVIAD EVYGHLAFGS KPFVPMGVFG SIVPVLTLGS LSKRWIVPGW RLGWFVTTDP SGSFKDPKII ERFKKYFDIL GGPATFIQAA VPTILEQTDE
301: SFFKKTLNSL KNSSDICCDW IKEIPCIDSS HRPEGSMAMM VKLNLSLLED VSDDIDFCFK LAREESVILL PGTAVGLKNW LRITFAADAT SIEEAFKRIK
401: CFYLRHAKTQ YPTI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)