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AT5G53960.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:17151019 (2007): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ATP binding;DNA binding;DNA topoisomerase (ATP-hydrolyzing)s
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ATP binding;DNA binding;DNA topoisomerase (ATP-hydrolyzing)s; FUNCTIONS IN: DNA topoisomerase (ATP-hydrolyzing) activity, DNA binding, ATP binding; INVOLVED IN: DNA topological change, DNA metabolic process; LOCATED IN: plasma membrane; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: DNA topoisomerase, type IIA, subunit A, alpha-helical (InterPro:IPR013757); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0187eggNOG:KOG0355EMBL:AB007644EMBL:CP002688EMBL:DQ132753EnsemblPlants:AT5G53960EnsemblPlants:AT5G53960.1
entrez:835479Gene3D:1.10.268.10GeneID:835479GO:GO:0003677GO:GO:0003918GO:GO:0005524GO:GO:0005774
GO:GO:0006265Gramene:AT5G53960.1InterPro:IPR013757KEGG:ath:AT5G53960ncoils:CoilProteomes:UP000006548RefSeq:NP_200207.1
STRING:3702.AT5G53960.1TAIR:AT5G53960UniGene:At.55539UniGene:At.69063UniProt:Q9FN31
Coordinates (TAIR10) chr5:+:21907725..21908452
Molecular Weight (calculated) 21985.20 Da
IEP (calculated) 4.51
GRAVY (calculated) -0.48
Length 189 amino acids
Sequence (TAIR10)
(BLAST)
001: MAASTSQLED TTREIIEGTS ILNIDDTSIL NIDDVMTSQL EDTIEKLKKV VRSLEEINRN STMASLTYKL YRFILEKEDE AAAELNAVDT DSIETKLVKL
101: ENKQRYIREV EDNPIDIRSL YRPKLVKLLK ERGFTPFPSE DKPFSHYDYL DVALHMELPI QKYEELCDQK NVLQDIVSIL KRIIDAYQH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)