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AT5G53950.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : NAC (No Apical Meristem) domain transcriptional regulator superfamily protein
Curator
Summary (TAIR10)
Transcriptional activator of the NAC gene family, with CUC1 redundantly required for embryonic apical meristem formation, cotyledon separation and expression of STM. Proper timing of CUC2 expression is required to maintain the phyllotactic pattern initiated in the meristem. CUC2 expression in leaf sinus region is required for serration and the extent of serration is modulated by mir164A mediated repression of CUC2.
Computational
Description (TAIR10)
CUP-SHAPED COTYLEDON 2 (CUC2); CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (TAIR:AT3G15170.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:20722eggNOG:ENOG410IVB7eggNOG:ENOG410Y9VPEMBL:AB002560EMBL:AB007644EMBL:BT030026EMBL:CP002688
EnsemblPlants:AT5G53950EnsemblPlants:AT5G53950.1entrez:835478GeneID:835478Genevisible:O04017GO:GO:0003677GO:GO:0003700
GO:GO:0005634GO:GO:0006351GO:GO:0010072GO:GO:0010160GO:GO:0010223GO:GO:0048366GO:GO:0048504
Gramene:AT5G53950.1hmmpanther:PTHR31744hmmpanther:PTHR31744:SF22HOGENOM:HOG000237406InParanoid:O04017IntAct:O04017InterPro:IPR003441
KEGG:ath:AT5G53950OMA:YDSRSTNPaxDb:O04017Pfam:O04017Pfam:PF02365Pfscan:PS51005PhylomeDB:O04017
PRIDE:O04017PRO:PR:O04017PROSITE:PS51005ProteinModelPortal:O04017Proteomes:UP000006548RefSeq:NP_200206.1SMR:O04017
STRING:3702.AT5G53950.1SUPFAM:SSF101941TAIR:AT5G53950tair10-symbols:ANAC098tair10-symbols:ATCUC2tair10-symbols:CUC2UniGene:At.55538
UniProt:O04017
Coordinates (TAIR10) chr5:-:21901966..21903795
Molecular Weight (calculated) 41436.40 Da
IEP (calculated) 8.52
GRAVY (calculated) -0.49
Length 375 amino acids
Sequence (TAIR10)
(BLAST)
001: MDIPYYHYDH GGDSQYLPPG FRFHPTDEEL ITHYLLRKVL DGCFSSRAIA EVDLNKCEPW QLPGRAKMGE KEWYFFSLRD RKYPTGLRTN RATEAGYWKA
101: TGKDREIFSS KTCALVGMKK TLVFYKGRAP KGEKSNWVMH EYRLEGKFSY HFISRSSKDE WVISRVFQKT TLASTGAVSE GGGGGGATVS VSSGTGPSKK
201: TKVPSTISRN YQEQPSSPSS VSLPPLLDPT TTLGYTDSSC SYDSRSTNTT VTASAITEHV SCFSTVPTTT TALGLDVNSF SRLPPPLGFD FDPFPRFVSR
301: NVSTQSNFRS FQENFNQFPY FGSSSASTMT SAVNLPSFQG GGGVSGMNYW LPATAEENES KVGVLHAGLD CIWNY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)