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AT5G53880.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.985
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J5ANeggNOG:ENOG41117ZHEMBL:AB007644EMBL:AY072405
EMBL:AY087057EMBL:BT000221EMBL:CP002688EnsemblPlants:AT5G53880
EnsemblPlants:AT5G53880.1entrez:835469GeneID:835469GO:GO:0005739
GO:GO:0005886Gramene:AT5G53880.1IntAct:Q9FN38KEGG:ath:AT5G53880
ncoils:CoilOMA:CFMKPKPProteomes:UP000006548RefSeq:NP_568802.1
STRING:3702.AT5G53880.1TAIR:AT5G53880UniGene:At.49171UniProt:Q9FN38
Coordinates (TAIR10) chr5:-:21872995..21873195
Molecular Weight (calculated) 7782.60 Da
IEP (calculated) 9.64
GRAVY (calculated) -1.56
Length 66 amino acids
Sequence (TAIR10)
(BLAST)
1: MKFLFQCPCC SCFCFMKPKP GKPKAVGDTK PKEEKKKEVK KEEIKKEEKK EEKKEEKKET KAEKAE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)