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AT5G53840.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.582
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : F-box/RNI-like/FBD-like domains-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
F-box/RNI-like/FBD-like domains-containing protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), FBD (InterPro:IPR013596), F-box domain, Skp2-like (InterPro:IPR022364), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/RNI-like/FBD-like domains-containing protein (TAIR:AT1G51370.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioGrid:20709eggNOG:ENOG410JJ8EeggNOG:ENOG411188EEMBL:AB007644EMBL:AB025616EMBL:CP002688EMBL:DQ056719
EnsemblPlants:AT5G53840EnsemblPlants:AT5G53840.1entrez:835465Gene3D:3.80.10.10GeneID:835465Genevisible:Q9FGQ3Gramene:AT5G53840.1
hmmpanther:PTHR32212hmmpanther:PTHR32212:SF126HOGENOM:HOG000015216InParanoid:Q9FGQ3InterPro:IPR001810InterPro:IPR006566InterPro:IPR013101
InterPro:IPR032675KEGG:ath:AT5G53840OMA:IQHIDISPaxDb:Q9FGQ3Pfam:PF00646Pfam:PF07723Pfam:PF08387
Pfam:Q9FGQ3Pfscan:PS50181PhylomeDB:Q9FGQ3PRIDE:Q9FGQ3PRO:PR:Q9FGQ3PROSITE:PS50181ProteinModelPortal:Q9FGQ3
Proteomes:UP000006548RefSeq:NP_568800.1SMART:SM00256SMART:SM00579SMR:Q9FGQ3STRING:3702.AT5G53840.1SUPFAM:SSF52047
SUPFAM:SSF81383TAIR:AT5G53840UniGene:At.55535UniProt:Q9FGQ3
Coordinates (TAIR10) chr5:-:21859148..21860672
Molecular Weight (calculated) 50910.00 Da
IEP (calculated) 7.31
GRAVY (calculated) 0.06
Length 444 amino acids
Sequence (TAIR10)
(BLAST)
001: MVKTEICGKG SSQGSEEERL SQLPDHLICV ILSHLSTKDA VRTSILSTRW RNLWQLVPVL DFDSRELRSF SEFVSFAGSF FYLHKDSYIQ KLRVCIYDLA
101: GNYYLTSWID LVTRHRIQHI DISVFTCSGF GVIPLSLYTC DTLVHLKLSR VTMVNVEFVS LPCLKILDLD FVNFTNETTL DKIISCSPVL EELTIVKSSE
201: DNVKIIQVRS QTLKRVEIHR RFDRHNGLVI DTPLLQFLSI KAHSIKSIEF INLGFTTKVD IDVNLLDPND LSNRSMTRDF FTTISRVRSL VIRHGTIKDI
301: FHYMELEPLQ QFCYLSELSA VCSISNLEML LNLLKSCPKL ESLSLKLVDY EKNKKEEVMS STVPPPCLVS SLKFVKLESQ LLGCGTELKV ARYFLENSTI
401: LEKLTLKIDY MYKDEANVNH IRQTLHAVPR CSSTCEVVIH SLLY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)