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AT5G53830.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.999
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : VQ motif-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
VQ motif-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: VQ (InterPro:IPR008889); BEST Arabidopsis thaliana protein match is: VQ motif-containing protein (TAIR:AT3G15300.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JUR8eggNOG:ENOG41106MQEMBL:AB017066EMBL:AF372918EMBL:AY127951EMBL:CP002688EnsemblPlants:AT5G53830
EnsemblPlants:AT5G53830.1entrez:835464GeneID:835464Genevisible:Q9FHZ3GO:GO:0005634Gramene:AT5G53830.1hmmpanther:PTHR33402
hmmpanther:PTHR33402:SF6HOGENOM:HOG000029122InterPro:IPR008889iPTMnet:Q9FHZ3KEGG:ath:AT5G53830OMA:HEAPSPVPaxDb:Q9FHZ3
Pfam:PF05678Pfam:Q9FHZ3PhylomeDB:Q9FHZ3PRO:PR:Q9FHZ3ProteinModelPortal:Q9FHZ3Proteomes:UP000006548RefSeq:NP_200194.1
STRING:3702.AT5G53830.1TAIR:AT5G53830UniGene:At.6987UniProt:Q9FHZ3
Coordinates (TAIR10) chr5:+:21857057..21857788
Molecular Weight (calculated) 26920.50 Da
IEP (calculated) 10.18
GRAVY (calculated) -0.80
Length 243 amino acids
Sequence (TAIR10)
(BLAST)
001: MEVSTSSMSS KPEQMQNPPP MISSPRFQPQ IISPHHHDQH QHLSNPYPTT FVQADTSTFK QVVQMLTGSS TDTTTGKHHE APSPVNNNNK GSSFSIPPIK
101: KTNSFKLYER RQNNNNMFAK NDLMINTLRL QNSQRLMFTG GNSSHHQSPR FSPRNSSSSE NILLSPSMLD FPKLGLNSPV TPLRSNDDPF NKSSPLSLGN
201: SSEEDKAIAD KGFYLHPSPV STPRDSQPLL LPLFPVASPA RNS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)