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AT5G53800.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:23667806 (2013): plastid plastid thylakoid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IFP0eggNOG:ENOG4111WQ9EMBL:CP002688EnsemblPlants:AT5G53800EnsemblPlants:AT5G53800.1entrez:835461GeneID:835461
Gramene:AT5G53800.1hmmpanther:PTHR34689hmmpanther:PTHR34689:SF1InParanoid:F4JXC2iPTMnet:F4JXC2KEGG:ath:AT5G53800ncoils:Coil
OMA:AYHRRMMPaxDb:F4JXC2PRIDE:F4JXC2ProteinModelPortal:F4JXC2Proteomes:UP000006548RefSeq:NP_568799.1STRING:3702.AT5G53800.1
TAIR:AT5G53800UniGene:At.1767UniGene:At.6984UniProt:F4JXC2
Coordinates (TAIR10) chr5:+:21848180..21849935
Molecular Weight (calculated) 41788.80 Da
IEP (calculated) 10.38
GRAVY (calculated) -1.88
Length 351 amino acids
Sequence (TAIR10)
(BLAST)
001: MGSDRDGAPP ENTKREVEDR DIRRKSSREK PSGSGKDSGE EKDVSRRRES KRRTKDGNDS GSESGLESGS ESEKEERRRS RKDRGKRKSD RKSSRSRRRR
101: RDYSSSSSDS ESESESEYSD SEESESEDER RRRKRKRKER EEEEKERKRR RREKDKKKRN KSDKDGDKKR KEKKKKKSEK VKKGAVTESW GKYGIIRETD
201: MWNKRPEFTA WLLEVKKVNL ESLPPWEEKK MFKDFMEDHN TGTFTSKKYY DIDGYYRLKL EKEMKKGLKK AGISERTVFN DEEQRRLEMQ ELRERQKEEE
301: VLALKRSMEG GMAQAMKEQA RLKEEMVYLY KIGDMEGAAA IQRRLDPDVP M
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)