AT5G53620.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
unknown protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 28929 Blast hits to 19542 proteins in 1425 species: Archae - 211; Bacteria - 3079; Metazoa - 14558; Fungi - 2157; Plants - 966; Viruses - 80; Other Eukaryotes - 7878 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:21781217..21785061 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 76321.20 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.67 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.86 | ||||||||||||||||||||||||||||||||
| Length | 682 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: METAASSVAT TRGGSLQNPS PTAPSRKEWR AVSDSQDTTD YVDLEQLKLN RTDERTIYEN GREQDGYSNS EMLQQQILNV SRKKGELQQL EIELRAQMIA 101: RHEIMEIQSN YESQFTEYAN AAARMQEQLH ENERSIREAE RKLEEKDREL HAIKLDNEAA WAKEGILREQ NKELATFRRE RDHSEAERSQ NIHKISELQE 201: HIQEKESQLS ELQEQNRIAQ ETILYKDEQL REAQGWIARA QEIDALQSST NHSLQAELRE RTEQYNQLWH GCQRQFAEME RLHVHTVQQL QQELANVREA 301: GGSKTNSGGA SQTIQNSGNQ FDAHGNSAES ANISVHSNGK SADNISSFTS TDDKATQNNR VDGISASNLA THGFLQAGQM TPLHSFVMHQ QEISQLVQPQ 401: VPSQHIEQSV LLQQKAQAVP DSSQMPMQNH VHPSQGVHGL VQSFGQGYGD IQTSQVAQYG TTTTPSSVNE QAVESGNGDY NGSNQSENNF QDISSQFRDA 501: LRLDSHSQNQ KPEELNGQVS PDEHSGAKSI VPETLVSSGK PERNSECALL DERSLLTCIL RTIPAGGRIR ISSTLPNRLG KMLAPLHWHD YRKKYGKLDD 601: FVASHLELFS IEDDYIQVRD GAQKMVAASA AAAKVAAAAA ASSSPNSIYV AMTPMAQSQG LKKNDNRVRQ SSDFMVKQQR KL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)